'STRAP:multiple sequence alignments '

charite.christo.interfaces
Interface TransmembraneHelix_Predictor

All Superinterfaces:
PredictionFromAminoacidSequence
All Known Implementing Classes:
TransmembraneHelix_DAS, TransmembraneHelix_HMMTOP, TransmembraneHelix_MEMSAT, TransmembraneHelix_ORIENTM, TransmembraneHelix_Phobius, TransmembraneHelix_PRED_TMR, TransmembraneHelix_SOSUI, TransmembraneHelix_SPLIT3, TransmembraneHelix_SPLIT4, TransmembraneHelix_THUMBUP, TransmembraneHelix_TMAP, TransmembraneHelix_TMAP_MULTI, TransmembraneHelix_TMHMM2, TransmembraneHelix_TMPRED, TransmembraneHelix_TOPPRED, TransmembraneHelix_WaveTM

public interface TransmembraneHelix_Predictor
extends PredictionFromAminoacidSequence

Classes that provide a prediction of membrane spanning helices. A container of GUI elements for the user is provided on pressing ICON:IC_CONTROLPANEL when the class implements HasControlPanel. The GUI elements may be used to select gap-panalties or BLOSUM matrices.


Method Summary
 
Methods inherited from interface charite.christo.interfaces.PredictionFromAminoacidSequence
compute, getPrediction, setGappedSequences
 


'STRAP:multiple sequence alignments '

'The most important classes are StrapAlign, StrapProtein and StrapEvent.'