'STRAP:multiple sequence alignments '

charite.andrean
Class SpBigMatrix

java.lang.Object
  extended by charite.andrean.SpBigMatrix

public final class SpBigMatrix
extends java.lang.Object


Field Summary
 SpBigVector[] value
           
 
Constructor Summary
SpBigMatrix()
           
 
Method Summary
 void copy_mat(double[][] original, double[][] copie)
           
 double determinante(double[][] the_matrix)
           
 int eigenvalue(double[][] the_matrix, double[] eigenwerte, double[][] eigenvector)
           
 int kern(double[][] A, double eps, double[][] B)
           
 void mat_mult(double[][] first_matrix, double[][] second_matrix, double[][] result)
           
 void mat_trans(double[][] original_matrix, double[][] result)
           
 boolean MatMinimierung(double[][] original, double[][] result, double[] min, boolean nur_drehung)
           
 int orthonorm(double[][] amatrix)
           
 
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

value

public SpBigVector[] value
Constructor Detail

SpBigMatrix

public SpBigMatrix()
Method Detail

copy_mat

public void copy_mat(double[][] original,
                     double[][] copie)

mat_trans

public void mat_trans(double[][] original_matrix,
                      double[][] result)

determinante

public double determinante(double[][] the_matrix)

mat_mult

public void mat_mult(double[][] first_matrix,
                     double[][] second_matrix,
                     double[][] result)

orthonorm

public int orthonorm(double[][] amatrix)

kern

public int kern(double[][] A,
                double eps,
                double[][] B)

eigenvalue

public int eigenvalue(double[][] the_matrix,
                      double[] eigenwerte,
                      double[][] eigenvector)

MatMinimierung

public boolean MatMinimierung(double[][] original,
                              double[][] result,
                              double[] min,
                              boolean nur_drehung)

'STRAP:multiple sequence alignments '

'The most important classes are StrapAlign, Protein and StrapEvent.'