charite.christo.protein
Interface SelectorOfNucleotides

All Known Implementing Classes:

ResidueAnnotation

public interface SelectorOfNucleotides

Selects nucleotides.

See Also:

ResidueSelection, ResidueAnnotation

Method Summary

Protein	getProtein()
boolean[]	getSelectedNucleotides()
int	getSelectedNucleotidesOffset() The goal is to reduce the size of the returned boolean array.
void	setProtein(Protein p)

Method Detail

setProtein

void setProtein(Protein p)

getProtein

Protein getProtein()

getSelectedNucleotides

boolean[] getSelectedNucleotides()

getSelectedNucleotidesOffset

int getSelectedNucleotidesOffset()

The goal is to reduce the size of the returned boolean array. if e.g. the 100th nt is selected getOffset() can return 99 and getSelectedNucleotides() can return new boolean[]{true}. BitSet would not have been a solution because the following causses OutOfMemoryError: new BitSet().set(1000*1000*1000,true);