charite.christo.protein
Class SingleFastaParser

java.lang.Object
  charite.christo.protein.SingleFastaParser

All Implemented Interfaces:

ProteinParser

public class SingleFastaParser
extends java.lang.Object
implements ProteinParser

HELP The fasta format is characterized by a greater than character followed by the header ( WIKI:FASTA_format).

Field Summary

Fields inherited from interface charite.christo.protein.ProteinParser

IGNORE_SEQRES, SEQUENCE_FEATURES, SIDE_CHAIN_ATOMS

Constructor Summary

SingleFastaParser()

Method Summary

boolean

parse(Protein prot, long options, BA ba)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SingleFastaParser

public SingleFastaParser()

Method Detail

parse

public boolean parse(Protein prot,
                     long options,
                     BA ba)

Specified by:

parse in interface ProteinParser

ba - the entire file contents It is a byte array and not a String Object for performance reasons.

Returns:

true: success, false: inappropriate file format