'STRAP:multiple sequence alignments '

charite.christo.strap
Class DialogPredictTexshade

java.lang.Object
  extended by charite.christo.strap.DialogPredictTexshade
All Implemented Interfaces:
java.awt.event.ActionListener, java.util.EventListener

public class DialogPredictTexshade
extends java.lang.Object
implements java.awt.event.ActionListener

HELP Makes texshade commands for the structure prediction Text lines starting with a percent sign are ignored since "%" preceeds comments in WIKI:LaTeX.

The line valid for helices is preceeded by "Hh" and the line valid for extended (i.e. beta sheet) is preceeded by "Ee". Generally speaking, each line is started with a character set followed by TeXshade code.


Constructor Summary
DialogPredictTexshade(char[][] prediction, Protein[] pp, java.lang.String name)
           
 
Method Summary
 void actionPerformed(java.awt.event.ActionEvent ev)
           
static void getTexts(BA sb, Protein[] proteins)
           
 javax.swing.JComponent panel()
           
 
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

DialogPredictTexshade

public DialogPredictTexshade(char[][] prediction,
                             Protein[] pp,
                             java.lang.String name)
Method Detail

panel

public javax.swing.JComponent panel()

getTexts

public static void getTexts(BA sb,
                            Protein[] proteins)

actionPerformed

public void actionPerformed(java.awt.event.ActionEvent ev)
Specified by:
actionPerformed in interface java.awt.event.ActionListener

'STRAP:multiple sequence alignments '

'The most important classes are StrapAlign, Protein and StrapEvent.'