charite.christo.strap.extensions
Class PhylogeneticTree_Archaeopteryx

java.lang.Object
  charite.christo.strap.extensions.PhylogeneticTree_Archaeopteryx

All Implemented Interfaces:

HasControlPanel, HasSharedControlPanel, NeedsSharedInstance, PhylogeneticTree

public class PhylogeneticTree_Archaeopteryx
extends java.lang.Object
implements PhylogeneticTree, HasControlPanel, HasSharedControlPanel

HELP Archaeopteryx takes a multiple sequence alignment and displays a phylogenetic tree.
Hompages: http://www.phylosoft.org/archaeopteryx/
Publication: PUBMED:11301314
License: LGPL
Author Christian Zmasek

Constructor Summary

PhylogeneticTree_Archaeopteryx()

Method Summary

void	drawTree() Drawws tree.
javax.swing.JComponent	getControlPanel(boolean real)
javax.swing.JComponent	getSharedControlPanel()
java.lang.Object	getSharedInstance()
void	setNamesIconsAndGappedSequences(java.lang.String[] names, javax.swing.ImageIcon[] icons, byte[][] aa)
void	setSharedInstance(java.lang.Object shared)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PhylogeneticTree_Archaeopteryx

public PhylogeneticTree_Archaeopteryx()

Method Detail

setSharedInstance

public void setSharedInstance(java.lang.Object shared)

Specified by:

setSharedInstance in interface NeedsSharedInstance

getSharedInstance

public java.lang.Object getSharedInstance()

Specified by:

getSharedInstance in interface NeedsSharedInstance

setNamesIconsAndGappedSequences

public void setNamesIconsAndGappedSequences(java.lang.String[] names,
                                            javax.swing.ImageIcon[] icons,
                                            byte[][] aa)

Specified by:

setNamesIconsAndGappedSequences in interface PhylogeneticTree

getControlPanel

public javax.swing.JComponent getControlPanel(boolean real)

Specified by:

getControlPanel in interface HasControlPanel

getSharedControlPanel

public javax.swing.JComponent getSharedControlPanel()

Specified by:

getSharedControlPanel in interface HasSharedControlPanel

drawTree

public void drawTree()

Description copied from interface: PhylogeneticTree

Drawws tree. Returns null or HTML-Result.

Specified by:

drawTree in interface PhylogeneticTree