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'STRAP:multiple sequence alignments ' | ||||||||
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java.lang.Object charite.christo.BasicExecutable charite.christo.strap.extensions.Toppred
public class Toppred
Field Summary |
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Fields inherited from class charite.christo.BasicExecutable |
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DEFAULT_BINARY, PFX_ADD_INCLUDE_LIMITS, PFX_DPKG, PFX_FIX_INCLUDE, REPLACEME_INLCUDE_STRING, RPLC_WIN_DOT_EXE |
Fields inherited from interface charite.christo.HasPrgParas |
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FURTHER_PARAMETERS |
Fields inherited from interface charite.christo.CanBeStopped |
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vALIGNMENTS |
Fields inherited from interface charite.christo.Disposable |
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NONE |
Fields inherited from interface charite.christo.ChRunnable |
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APPEND, COLUMN_TITLE, DOWNLOAD_FINISHED, GET_PANEL, ICON, INTERPRET_LINE, IS_DRAG4XY, ITEM_TEXT, MODIFY_RENDERER_COMPONENT, PROGRESS, REPAINT_CURSOR, SAY_DOWNLOADING, SET_ICON_IMAGE, SET_TREE_VALUE, SHOW_IN_FRAME, TAB_TEXT, TIP_TEXT |
Constructor Summary | |
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Toppred()
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Method Summary | |
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void |
compute()
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double[] |
getHydrophobicity()
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char[] |
getTM_Helices()
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void |
setSequence(java.lang.String name,
java.lang.String s)
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Methods inherited from class charite.christo.BasicExecutable |
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checkForUpdates, defineParameters, dirBinaries, dirTemp, dispose, exec, exec, failedToLaunch, fileExecutable, fileIn, fileOut, getControlPanel, getName, getPrgParas, getSharedInstance, init, initExecutable, installBioPerl, installPackage, isBioPerlInstalled, isPerlInstalled, isStopped, msgInstallCompilers, perlCommand, run, setBinaryPackageURLs, setFileExecutable, setName, setSharedInstance, setSourceInstallationScript, setSourcePackageURLs, stop, toString |
Methods inherited from class java.lang.Object |
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equals, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Methods inherited from interface charite.christo.HasPrgParas |
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defineParameters, getPrgParas |
Methods inherited from interface charite.christo.NeedsSharedInstance |
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getSharedInstance, setSharedInstance |
Constructor Detail |
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public Toppred()
Method Detail |
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public void setSequence(java.lang.String name, java.lang.String s)
public char[] getTM_Helices()
public double[] getHydrophobicity()
public void compute()
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