'STRAP:multiple sequence alignments '

charite.christo
Class ChJarSignersHardLinker

java.lang.Object
  extended by java.lang.Thread
      extended by charite.christo.ChJarSignersHardLinker
All Implemented Interfaces:
java.lang.Runnable

public class ChJarSignersHardLinker
extends java.lang.Thread

A utility class for working around the java webstart jar signing/security bug see http://bugs.sun.com/view_bug.do?bug_id=6967414 and http://bugs.sun.com/bugdatabase/view_bug.do?bug_id=6805618


Nested Class Summary
 
Nested classes/interfaces inherited from class java.lang.Thread
java.lang.Thread.State, java.lang.Thread.UncaughtExceptionHandler
 
Field Summary
 
Fields inherited from class java.lang.Thread
MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY
 
Constructor Summary
ChJarSignersHardLinker()
           
 
Method Summary
static java.util.jar.JarFile[] getAllJarsFilesInClassPath()
          get all the JarFile objects for all of the jars in the classpath
static java.util.jar.JarFile getJarFile(java.net.URL jarUrl)
           
static boolean isEnabled()
          is the preloader enabled.
 void run()
           
 
Methods inherited from class java.lang.Thread
activeCount, checkAccess, countStackFrames, currentThread, destroy, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, stop, suspend, toString, yield
 
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Constructor Detail

ChJarSignersHardLinker

public ChJarSignersHardLinker()
Method Detail

isEnabled

public static boolean isEnabled()
is the preloader enabled. ie: will the preloader run in the current environment

Returns:

getAllJarsFilesInClassPath

public static java.util.jar.JarFile[] getAllJarsFilesInClassPath()
get all the JarFile objects for all of the jars in the classpath

Returns:

getJarFile

public static java.util.jar.JarFile getJarFile(java.net.URL jarUrl)
                                        throws java.io.IOException
Throws:
java.io.IOException

run

public void run()
Specified by:
run in interface java.lang.Runnable
Overrides:
run in class java.lang.Thread

'STRAP:multiple sequence alignments '

'The most important classes are StrapAlign, Protein and StrapEvent.'