'STRAP:multiple sequence alignments '

charite.christo
Class ChTokenizer

java.lang.Object
  extended by charite.christo.ChTokenizer

public class ChTokenizer
extends java.lang.Object

A fast Tokenizer


Constructor Summary
ChTokenizer()
           
 
Method Summary
 byte[] asBytearray(byte[] buffer)
           
 byte asChar()
           
 double asFloat()
           
 int asInt()
           
 long asLong()
           
 java.lang.String asString()
           
 java.lang.String asStringIP()
           
 boolean containsOnly(int charClass)
           
 int countTokens()
           
 boolean eq(java.lang.String s)
           
 int from()
           
 java.lang.String nextAsString()
           
 java.lang.String nextAsStringTrim()
           
 boolean nextToken()
           
 java.lang.String remainingAsString(boolean trim)
           
 ChTokenizer setDelimiters(boolean[] charClass)
           
 ChTokenizer setText(BA ba)
           
 ChTokenizer setText(byte[] bb, int begin, int endPosition)
           
 int to()
           
 ChTokenizer trim()
           
 
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

ChTokenizer

public ChTokenizer()
Method Detail

countTokens

public int countTokens()

setText

public ChTokenizer setText(BA ba)

setText

public ChTokenizer setText(byte[] bb,
                           int begin,
                           int endPosition)

setDelimiters

public ChTokenizer setDelimiters(boolean[] charClass)

trim

public ChTokenizer trim()

containsOnly

public boolean containsOnly(int charClass)

eq

public boolean eq(java.lang.String s)

from

public int from()

to

public int to()

nextToken

public boolean nextToken()

nextAsString

public java.lang.String nextAsString()

remainingAsString

public java.lang.String remainingAsString(boolean trim)

nextAsStringTrim

public java.lang.String nextAsStringTrim()

asString

public java.lang.String asString()

asStringIP

public java.lang.String asStringIP()

asBytearray

public byte[] asBytearray(byte[] buffer)

asInt

public int asInt()

asLong

public long asLong()

asFloat

public double asFloat()

asChar

public byte asChar()

'STRAP:multiple sequence alignments '

'The most important classes are StrapAlign, Protein and StrapEvent.'