'STRAP:multiple sequence alignments '

charite.christo
Class OccurInText

java.lang.Object
  extended by charite.christo.OccurInText

public final class OccurInText
extends java.lang.Object

Find places of patterns in text


Constructor Summary
OccurInText()
           
 
Method Summary
static byte[][][] addToLookupTable(java.lang.Object[] ss, byte[][][] lookupTable)
           
static int[] find(long mode, byte[] needle, boolean[] delimL, boolean[] delimR, BA ba, int[] buffer)
           
static int[] findLU(byte[][][] lookup, BA ba, boolean[] delimL, boolean[] delimR, IsEnabled isEnabled, int[] buffer)
           
 
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

OccurInText

public OccurInText()
Method Detail

find

public static int[] find(long mode,
                         byte[] needle,
                         boolean[] delimL,
                         boolean[] delimR,
                         BA ba,
                         int[] buffer)

findLU

public static int[] findLU(byte[][][] lookup,
                           BA ba,
                           boolean[] delimL,
                           boolean[] delimR,
                           IsEnabled isEnabled,
                           int[] buffer)

addToLookupTable

public static byte[][][] addToLookupTable(java.lang.Object[] ss,
                                          byte[][][] lookupTable)

'STRAP:multiple sequence alignments '

'The most important classes are StrapAlign, Protein and StrapEvent.'