charite.christo
Class OccurInText
java.lang.Object
charite.christo.OccurInText
public final class OccurInText
- extends java.lang.Object
Find places of patterns in text
Method Summary |
static byte[][][] |
addToLookupTable(java.lang.Object[] ss,
byte[][][] lookupTable)
|
static int[] |
find(long mode,
byte[] needle,
boolean[] delimL,
boolean[] delimR,
BA ba,
int[] buffer)
|
static int[] |
findLU(byte[][][] lookup,
BA ba,
boolean[] delimL,
boolean[] delimR,
IsEnabled isEnabled,
int[] buffer)
|
Methods inherited from class java.lang.Object |
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
OccurInText
public OccurInText()
find
public static int[] find(long mode,
byte[] needle,
boolean[] delimL,
boolean[] delimR,
BA ba,
int[] buffer)
findLU
public static int[] findLU(byte[][][] lookup,
BA ba,
boolean[] delimL,
boolean[] delimR,
IsEnabled isEnabled,
int[] buffer)
addToLookupTable
public static byte[][][] addToLookupTable(java.lang.Object[] ss,
byte[][][] lookupTable)
'The most important classes are StrapAlign, Protein and StrapEvent.'