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'STRAP:multiple sequence alignments ' | ||||||||
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java.lang.Object charite.christo.interfaces.AbstractPredictionFromAminoacidSequence
public abstract class AbstractPredictionFromAminoacidSequence
Field Summary | |
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Container |
controlPanel
|
boolean |
disposed
|
char[][] |
prediction
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int |
resultNumber
|
String[] |
sequences
|
Constructor Summary | |
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AbstractPredictionFromAminoacidSequence()
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Method Summary | |
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void |
compute()
Computation is started and may take long time. |
abstract char[] |
compute(String sequ)
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int |
countResults()
|
void |
dispose()
|
String |
findUrlInText(String txt)
|
Class |
getCacheClass()
The class name determins the directory on HD |
String |
getCacheKey()
Several values are stored in one and the same file on HD to avoid making too many files. |
String |
getCacheSection()
The class determines a parent directory to save the files. |
Container |
getControlPanel()
|
ByteArray |
getIndirectResult(String SERVER,
Object[][] postData)
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char[][] |
getPrediction()
Returns a character for each sequence position. |
ByteArray |
getResult(String SERVER,
Object[][] postData)
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int |
getResultNumber()
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String |
getUrlOfResult()
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void |
log(Object... oo)
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String |
serverRoot()
|
void |
setGappedSequences(String[] ss)
set the sequences. |
void |
setResultNumber(int resNr)
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Methods inherited from class java.lang.Object |
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equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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public int resultNumber
public String[] sequences
public char[][] prediction
public Container controlPanel
public boolean disposed
Constructor Detail |
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public AbstractPredictionFromAminoacidSequence()
Method Detail |
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public void setResultNumber(int resNr)
public int getResultNumber()
public int countResults()
public Container getControlPanel()
public void setGappedSequences(String[] ss)
PredictionFromAminoacidSequence
setGappedSequences
in interface PredictionFromAminoacidSequence
public void log(Object... oo)
public char[][] getPrediction()
PredictionFromAminoacidSequence
getPrediction
in interface PredictionFromAminoacidSequence
public String getCacheSection()
CacheResult.Cacheable
getCacheSection
in interface CacheResult.Cacheable
public String getCacheKey()
CacheResult.Cacheable
getCacheKey
in interface CacheResult.Cacheable
public Class getCacheClass()
CacheResult.Cacheable
getCacheClass
in interface CacheResult.Cacheable
public void dispose()
dispose
in interface Disposable
public void compute()
PredictionFromAminoacidSequence
compute
in interface PredictionFromAminoacidSequence
public abstract char[] compute(String sequ)
public ByteArray getResult(String SERVER, Object[][] postData)
public String findUrlInText(String txt)
public String serverRoot()
public ByteArray getIndirectResult(String SERVER, Object[][] postData)
public String getUrlOfResult()
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