'STRAP:multiple sequence alignments '

Package charite.christo.interfaces

Interface Summary
CanBeStopped  
ChCustomDictionaryProvider  
ChProcessEvent  
ChRunnable  
Colored Implemented by colored objects.
CommandInterpreter Command interpreters can interpret commands given as a command line.
Disposable Implemented by objects such as dialogs or plugins that can be disposed.
FileEditor  
HasChildren  
HasClientProperty  
HasControlPanel Implemented by objects that can contain a GUI where the user can manipulate the inner state.
HasDndFiles  
HasID  
HasImage  
HasName  
HasPanel Implemented by objects that have a GUI.
HasProtein Implemented by objects that contain references to Proteins.
HasRendererComponent For the Tree and List renderers
HasRendererText For the Tree and List renderers
HasScore This interface denotes objects that have a numeric value which is a score.
HasSharedControlPanel Implemented by objects that can contain a GUI where the user can manipulate the inner state.
IsEnabled  
NeedsInternet  
NeedsSharedInstance  
PaintHook  
PreferredSize  
ProteinAlignment HELP PACKAGE:charite.christo.strap. PACKAGE:charite.christo.
ProteinAlignmentWithGUI  
ProteinListener  
ProteinViewer A protein viewer can display proteins three-dimensionally.
ResidueSelection HELP PACKAGE:charite.christo.strap. Residue selections are objects attached to proteins which select one or more amino acid positions from the amino acid sequence.
SequenceAligner Classes that provide a calculation of sequence alignments.
Superimpose3D Implemented by plugins that perform a 3D-superposition of the C-alpha atoms of two protein chains.
TooltipProvider  
VisibleIn123 Determins the style how a selection is visualized and where it is visualized.
 

Class Summary
AbstractVisibleIn123 An abstract implementation of VisibleIn123.
Superimpose3D.Result  
 


'STRAP:multiple sequence alignments '

'The most important classes are StrapAlign, StrapProtein and StrapEvent.'