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| Interface Summary | |
|---|---|
| DatasetView | |
| HasInfoText | Implemented by objects that have a short info text. |
| MSpreadSheet.Interface | |
| MSpreadSheet.InterfaceBoolean | |
| Reaction | This object holds a biochemical conversion reactants into products. |
| ReactionCollection | |
| Species | |
| Class Summary | |
|---|---|
| AbstractDatasetView | |
| AnalyzeDatasets | |
| BraceExpansion | HELP Some enzymes and transport carriers are unspecific. |
| Columns | |
| CombineDatasets | Modify and save this java WIKI:Source_code. |
| ComparatorSortReactions | |
| CompoundSumFormula | |
| Dataset | HELP The data for each reaction which is collected by the curator is organized in datasets. |
| Dataset2Reaction | |
| DatasetToText | |
| DatasetUtils | |
| DatasetViewUtils | HELP |
| DialogConvertEnsgToRid | |
| DialogHighlightInPathway | HELP The List contains reaction IDs of the form R02740@cyto. |
| EC_Class | |
| EquationPopup | |
| ExpressionData2 | |
| ExpressionDataSpecialTools | |
| FluxData | HELP With this dialog numeric values can be highlighted in graphical pathway maps. |
| KeggFloatData | |
| KeggLoader | |
| MapEnsgKO | HELP java charite.christo.metannogen.preparation.MapEnsgKO The class MapEnsgKO is used to create a table of RIDs, ENSG and Affymetrix IDs. |
| Metannogen | HELP |
| MetannogenFrame | HELP
Preparing document for printing:
When printing, backgrounds are automatically turned to white. |
| MetannogenGoogleReaction | Yes, you can- here is a search for all mouse data: http://www.ncbi.nlm.nih.gov/gquery/gquery.fcgi?term=Mouse%5Borgn%5D http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=pubmed&term=mouse |
| MetannogenMain | HELP Metannogen requires Java version 1.5 or higher. |
| MetannogenStatics | |
| MetannogenTree | HELP
Several browsable trees are available in different tabs of the tabbed pane:
Tabs for networks like KEGG and the Palsson-Human-Network
Tab for objects matching a keyword search
Tab for clicked objects
Tab for datasets
Tab for datasets ordered by pathway
Multiple selection of tree nodes follows the conventions of Windows and X-Windows and requires the Shift key and the Ctrl key. |
| MetannogenTreeSelection | |
| MetannogenUserScripts | HELP This Dialog allows Export the network as SBML or SQL and to modify the export at Java source code level. Process network data To validate dataset during input The Dialog is organized as a tabbed pane with a tab for each category. |
| MObject | First invokation of a getter my take several Mikroseconds. |
| MReaction | First invokation of a getter my take several Mikroseconds. |
| MReactionCollection | |
| MReactionUtils | |
| MSearchReplace | HELP |
| MSpecies | |
| MSpreadSheet | |
| PalssonCompareKegg | The Palsson human cell model |
| Pathway | |
| PathwayViews | HELP The KEGG database provides graphical representations for several classical pathways. |
| ReactionCollectionUtils | Implementation independent Utilities |
| ReplaceInComment | |
| SBML_loader | The Palsson human cell model |
| SBML_preprocessor | The Palsson human cell model http://sbml.org/specifications/sbml-level-2-v1.pdf |
| SuggestTransporters | |
| Swissprot | |
| UploadDatasets | HELP A Metannogen datasets contain a biochemical equation and expert opinion edited by the curator. |
| VerifyDatasets | |
|
'STRAP:multiple sequence alignments ' | ||||||||
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