charite.christo.metannogen
Class MObject

java.lang.Object
  charite.christo.metannogen.MObject

All Implemented Interfaces:

DialogStringMatch.Interface, HasID, HasName, Cloneable

Direct Known Subclasses:

MReaction, MSpecies

public class MObject
extends Object
implements HasID, Cloneable, HasName, DialogStringMatch.Interface

First invokation of a getter my take several Mikroseconds. Then all outputs are cached and take Nanos. All metabolite and compartment Strings are finalized and can be compared by identity instead of equals which is faster.

Constructor Summary

MObject()

Method Summary

Object	clone()
String	getAttribute(String key)
double	getAttributeF(String key)
int	getAttributeI(String key)
Map<String,String>	getAttributes()
Object	getClientProperty(Object o)
String	getClientPropertyMapAsString()
MReactionCollection	getCollection()
ByteArray	getEntireText()
Object	getHaystacksForStringSearch(int mode)
String	getID()
String	getIDMapped()
String	getIDMappedSimilar()
String	getName()
MObject	getParent()
Object	getTopAncestor()
String	getTopAncestorID()
static void	main(String[] argv)
void	putClientProperty(Object key, Object value)
void	setAttributes(Map<String,String> map) Additional information such as setAttribute("$DEPENDSON","blabla");
void	setCollection(ReactionCollection f)
void	setID(String id)
void	setName(CharSequence s)
void	setParent(MObject ds)
void	setTextBlock(CharSequence s)
String	toString()

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

MObject

public MObject()

Method Detail

getCollection

public MReactionCollection getCollection()

setCollection

public void setCollection(ReactionCollection f)

getClientPropertyMapAsString

public String getClientPropertyMapAsString()

putClientProperty

public final void putClientProperty(Object key,
                                    Object value)

getClientProperty

public final Object getClientProperty(Object o)

setID

public void setID(String id)

getIDMappedSimilar

public String getIDMappedSimilar()

getIDMapped

public String getIDMapped()

getID

public String getID()

Specified by:

getID in interface HasID

getName

public String getName()

Specified by:

getName in interface HasName

setName

public void setName(CharSequence s)

setAttributes

public void setAttributes(Map<String,String> map)

Additional information such as setAttribute("$DEPENDSON","blabla");

getAttributes

public Map<String,String> getAttributes()

getAttribute

public String getAttribute(String key)

getAttributeF

public double getAttributeF(String key)

getAttributeI

public int getAttributeI(String key)

clone

public Object clone()

Overrides:

clone in class Object

getParent

public MObject getParent()

setParent

public void setParent(MObject ds)

getTopAncestor

public Object getTopAncestor()

getTopAncestorID

public String getTopAncestorID()

main

public static void main(String[] argv)
                 throws Exception

Throws:

Exception

toString

public String toString()

Overrides:

toString in class Object

setTextBlock

public void setTextBlock(CharSequence s)

getEntireText

public ByteArray getEntireText()

getHaystacksForStringSearch

public Object getHaystacksForStringSearch(int mode)

Specified by:

getHaystacksForStringSearch in interface DialogStringMatch.Interface