'STRAP:multiple sequence alignments '

charite.christo.metannogen
Class Pathway

java.lang.Object
  extended by charite.christo.metannogen.Pathway
All Implemented Interfaces:
DialogStringMatch.Interface, Colored, HasChildren, HasID, HasName, HasRendererText, HasInfoText, Comparable

public class Pathway
extends Object
implements HasChildren, HasRendererText, HasName, Colored, HasInfoText, Comparable, HasID, DialogStringMatch.Interface


Field Summary
static String[] ANDREAS
           
static String[] CHRISTOPHS
           
static String[] HERGOS
           
static String[] KATRINS
           
static Pathway[] NONE
           
static String[] SASCHAS
           
 
Fields inherited from interface charite.christo.interfaces.HasRendererText
JLIST
 
Constructor Summary
Pathway(String id, String name)
           
 
Method Summary
 int compareTo(Object o)
           
 boolean equals(Object o)
           
 Object[] getChildren()
           
 Color getColor()
           
 Object getHaystacksForStringSearch(int mode)
           
 String getID()
           
 String getInfoText()
           
 String getName()
           
 String getRendererText(int options)
           
 boolean hasChildren()
           
 int hashCode(Object o)
           
 void setColor(Color color)
           
 String toString()
           
 
Methods inherited from class java.lang.Object
getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Field Detail

NONE

public static final Pathway[] NONE

HERGOS

public static final String[] HERGOS

SASCHAS

public static final String[] SASCHAS

CHRISTOPHS

public static final String[] CHRISTOPHS

KATRINS

public static final String[] KATRINS

ANDREAS

public static final String[] ANDREAS
Constructor Detail

Pathway

public Pathway(String id,
               String name)
Method Detail

getID

public final String getID()
Specified by:
getID in interface HasID

getName

public final String getName()
Specified by:
getName in interface HasName

compareTo

public int compareTo(Object o)
Specified by:
compareTo in interface Comparable

equals

public final boolean equals(Object o)
Overrides:
equals in class Object

hashCode

public final int hashCode(Object o)

toString

public String toString()
Overrides:
toString in class Object

hasChildren

public boolean hasChildren()
Specified by:
hasChildren in interface HasChildren

getChildren

public Object[] getChildren()
Specified by:
getChildren in interface HasChildren

getInfoText

public final String getInfoText()
Specified by:
getInfoText in interface HasInfoText

getColor

public final Color getColor()
Specified by:
getColor in interface Colored

setColor

public void setColor(Color color)
Specified by:
setColor in interface Colored

getRendererText

public final String getRendererText(int options)
Specified by:
getRendererText in interface HasRendererText

getHaystacksForStringSearch

public Object getHaystacksForStringSearch(int mode)
Specified by:
getHaystacksForStringSearch in interface DialogStringMatch.Interface

'STRAP:multiple sequence alignments '

'The most important classes are StrapAlign, StrapProtein and StrapEvent.'