'STRAP:multiple sequence alignments '

charite.christo.metannogen
Class ExpressionData2

java.lang.Object
  extended by charite.christo.metannogen.ExpressionData2
All Implemented Interfaces:
ChProcessEvent, PaintHook, TooltipProvider

public class ExpressionData2
extends Object
implements ChProcessEvent, PaintHook, TooltipProvider


Field Summary
static int DISPLAY_AVERAGE
           
static int DISPLAY_AVERAGE_COLOR
           
static int DISPLAY_BARS
           
static int DISPLAY_RANG
           
 
Constructor Summary
ExpressionData2()
           
 
Method Summary
 charite.christo.metannogen.ExpressionData2.Data[] dataForID(String kegg)
           
 int[] getSelectedColumns()
           
 String getToolTipText(JComponent pathwayView, MouseEvent ev)
           
static void main(String[] argv)
           
 boolean paintHook(JComponent pathwayView, Graphics graphics, boolean after)
           
 boolean processEvent(JComponent c, AWTEvent ev)
          returns true if the component should also invoke processEvent();
 void readData(File file)
           
 void show()
           
 
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

DISPLAY_BARS

public static final int DISPLAY_BARS
See Also:
Constant Field Values

DISPLAY_RANG

public static final int DISPLAY_RANG
See Also:
Constant Field Values

DISPLAY_AVERAGE

public static final int DISPLAY_AVERAGE
See Also:
Constant Field Values

DISPLAY_AVERAGE_COLOR

public static final int DISPLAY_AVERAGE_COLOR
See Also:
Constant Field Values
Constructor Detail

ExpressionData2

public ExpressionData2()
Method Detail

getSelectedColumns

public int[] getSelectedColumns()

show

public void show()

dataForID

public charite.christo.metannogen.ExpressionData2.Data[] dataForID(String kegg)

readData

public final void readData(File file)
                    throws IOException
Throws:
IOException

processEvent

public boolean processEvent(JComponent c,
                            AWTEvent ev)
Description copied from interface: ChProcessEvent
returns true if the component should also invoke processEvent();

Specified by:
processEvent in interface ChProcessEvent

getToolTipText

public String getToolTipText(JComponent pathwayView,
                             MouseEvent ev)
Specified by:
getToolTipText in interface TooltipProvider

paintHook

public boolean paintHook(JComponent pathwayView,
                         Graphics graphics,
                         boolean after)
Specified by:
paintHook in interface PaintHook
after - This method is called once before and once after super.paintComponent.
Returns:
means do not call super.paintComponent

main

public static void main(String[] argv)
                 throws Exception
Throws:
Exception

'STRAP:multiple sequence alignments '

'The most important classes are StrapAlign, StrapProtein and StrapEvent.'