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Constant Field Values

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charite.andrean.*

charite.andrean.Area
public static final int max_area_size 1000

charite.christo.*

charite.christo.AbstractProxy
public static final short ACTIVATION 7
public static final java.lang.String ADAPTERS_JAR "strapAdapterClasses1.jar"
public static final short BIOJAVA_3D 12
public static final short COMMONS_COLLECTIONS 1
public static final short GLUGEN 11
public static final short JCOMMON 3
public static final short JOGL 10
public static final short LOG4J 4
public static final java.lang.String PFX_INSTALLED "AP$$PI"
public static final int TRY_BOOT_CLASSLOADER 1

charite.christo.AnsiEscape
public static final int BLINK 32
public static final int BOLD 2
public static final int FAINT 4
public static final int INVISIBLE 256
public static final long MASK_POS -1L
public static final long MASK_POS_INV -4294967296L
public static final int NO_BLINK 25
public static final int NO_REVERSE 26
public static final int NO_STANDOUT 16777216
public static final int NO_UNDERLINE 24
public static final int REVERSE 128
public static final int SHIFT_CODE 40
public static final int SHIFT_LEN 32
public static final int STANDOUT 8
public static final int UNDERLINE 16

charite.christo.BA
public static final int ERROR_PERMISSION_DENIED_BY_USER 1
public static final int OPTION_CACHE_TO_STRG 4
public static final int OPTION_IS_FILTERED 2
public static final long STRING_POOL 1073741824L
public static final long STRING_TRIM 2147483648L

charite.christo.BasicExecutable
public static final java.lang.String DEFAULT_BINARY "*"
public static final java.lang.String PFX_ADD_INCLUDE_LIMITS "\nPFX_INCLUDE_LIMITS"
public static final java.lang.String PFX_DPKG "\nPFX_DPKG "
public static final java.lang.String PFX_FIX_INCLUDE "\nPFX_STRGH "
public static final java.lang.String RPLC_WIN_DOT_EXE "AE$$RWDE"

charite.christo.ButColor
public static final long NO_EVENT_IF_EQUALS 8L
public static final long NO_TRANSPARENCY 1L
public static final long SHOW_PREVIEW_PANEL 2L
public static final long TRANSPARENCY_CHANGE_EVT 4L

charite.christo.ChAppleScript
public static final int MINIMIZE_DOWNLOADS 1

charite.christo.ChButton
public static final long ARROWS_MAXIMIZE 32768L
public static final java.lang.String BUTTON_GO "<html><body><font color=#007c00><b> GO </b></font></body></html>"
public static final long CROSSING_OUT 2L
public static final long DISABLED 512L
public static final java.lang.String FIRST_REVIOUS_NEXT_LAST "|< < > >|"
public static final java.lang.String GO "CB$$1"
public static final long HEIGHT_I 1024L
public static final long HIDE_IF_DISABLED 4096L
public static final long ICON_SIZE 64L
public static final java.lang.String KEY_CLASS "CB$$kc"
public static final java.lang.String KEY_COLOR_BOX_L "CB$$KCBl"
public static final java.lang.String KEY_COLOR_BOX_R "CB$$KCBr"
public static final java.lang.String KEY_DO_CLICK "CB$$DC"
public static final java.lang.String KEY_DO_UNSEL "CR$$US"
public static final java.lang.String KEY_JTabbedPane "CB$$KJTP"
public static final java.lang.String KEY_MENU_ITEMS "CB$$mi"
public static final java.lang.String KEY_SHARED_CTRL "CB$$SC"
public static final java.lang.String KEY_VIEW_MSG "CB$$M"
public static final long MAC_TYPE_ICON 8192L
public static final long NO_BORDER 16L
public static final long NO_FILL 8L
public static final long NOT_OPAQUE 128L
public static final long ON_PRESS_GC 65536L
public static final long PAINT_DIRECT 262144L
public static final long PAINT_IF_ENABLED 16384L
public static final long PAINT_IN_TABLE 256L
public static final java.lang.String PFX_VERTICAL "CR$$V"
public static final java.lang.String RUN_PUSHED "CB$$RP"
public static final long RUNNABLE_BG 131072L
public static final long SHOW_HIDE 4L
public static final long UNDOCKABLE 2048L

charite.christo.ChCodeViewer
public static final long ANSI 4L
public static final long HTML 2L
public static final long HTML_BODY 10L

charite.christo.ChComparator
public static final java.lang.String KEY_DEFAULT_ORDER "ChC$$KO"

charite.christo.ChConstants
public static final java.lang.String _CC "charite.christo."
public static final java.lang.String _CCB "charite.christo.blast."
public static final java.lang.String _CCM "charite.christo.metannogen."
public static final java.lang.String _CCP "charite.christo.protein."
public static final java.lang.String _CCS "charite.christo.strap."
public static final java.lang.String _CCSE "charite.christo.strap.extensions."
public static final java.lang.String _CCSSC "charite.christo.strap.science."
public static final java.lang.String ACTION_CHANGE_EVENT "CF$$SC"
public static final java.lang.String ACTION_CLICKED "CLICKED"
public static final java.lang.String ACTION_CLICKED_AFTER_SUPER "CLICKED_AS"
public static final java.lang.String ACTION_CLICKED_DOUBLE "CLICKED2"
public static final java.lang.String ACTION_CLICKED_DOUBLE_AFTER_SUPER "CLICKED2_AS"
public static final java.lang.String ACTION_COLOR_CHANGED "CC$$ACC"
public static final java.lang.String ACTION_CUSTOMIZE_CHANGED "CC$$CUST_C"
public static final java.lang.String ACTION_DATABASE_CLICKED "CC$$_DB_"
public static final java.lang.String ACTION_DELETE_OR_BACKSPACE "CC$$_D"
public static final java.lang.String ACTION_DOWNLOAD_PLUGIN "ACTION_DOWNLOAD_PLUGIN"
public static final java.lang.String ACTION_ENTER "CC$$_E"
public static final java.lang.String ACTION_FOCUS_GAINED "CC$$_FG"
public static final java.lang.String ACTION_FOCUS_LOST "CC$$__FL"
public static final java.lang.String ACTION_MENU_SELECTED "CC$$MENU_S"
public static final java.lang.String ACTION_SELECTION_CHANGED "CC$$ASC"
public static final java.lang.String ACTION_TABLE_CHANGED "CC$$ATC"
public static final java.lang.String ACTION_TEXT_CHANGED "CC$$_CH"
public static final java.lang.String ACTION_WINDOW_ACTIVATED "CF$$WACT"
public static final java.lang.String ACTION_WINDOW_CLOSING "CF$$WC"
public static final java.lang.String ACTION_WINDOW_DEACTIVATED "CF$$WDA"
public static final java.lang.String ANSI_BLACK "\u001b[40m"
public static final java.lang.String ANSI_BLUE "\u001b[44m"
public static final java.lang.String ANSI_BOLD "\u001b[1m"
public static final java.lang.String ANSI_CYAN "\u001b[46m"
public static final java.lang.String ANSI_FG_BLACK "\u001b[30m"
public static final java.lang.String ANSI_FG_BLUE "\u001b[34m"
public static final java.lang.String ANSI_FG_CYAN "\u001b[36m"
public static final java.lang.String ANSI_FG_GREEN "\u001b[32m"
public static final java.lang.String ANSI_FG_MAGENTA "\u001b[35m"
public static final java.lang.String ANSI_FG_RED "\u001b[31m"
public static final java.lang.String ANSI_FG_WHITE "\u001b[37m"
public static final java.lang.String ANSI_FG_YELLOW "\u001b[33m"
public static final java.lang.String ANSI_GREEN "\u001b[42m"
public static final java.lang.String ANSI_MAGENTA "\u001b[45m"
public static final java.lang.String ANSI_RED "\u001b[41m"
public static final java.lang.String ANSI_RESET "\u001b[0m"
public static final java.lang.String ANSI_TERMINAL "\u001b[40m\u001b[32m"
public static final java.lang.String ANSI_UL "\u001b[4m"
public static final java.lang.String ANSI_W_ON_B "\u001b[37m\u001b[40m"
public static final java.lang.String ANSI_W_ON_R "\u001b[37m\u001b[41m"
public static final java.lang.String ANSI_WHITE "\u001b[47m"
public static final java.lang.String ANSI_YELLOW "\u001b[43m"
public static final java.lang.String ARRAY_CP "CC$$ACP"
public static final int ARRAY_DURATION 2
public static final int ATOM_CA 541147936
public static final java.lang.String BASE64_CHARS "ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789+/"
public static final int BG_NOT_EDITABLE 15658734
public static final java.lang.String BLUE_DEBUG "\u001b[44mDEBUG> \u001b[0m"
public static final double BUGFIX_OPENJDK_G2 0.1
public static final java.lang.String CLASS_Aligner3D "charite.christo.strap.Aligner3D"
public static final java.lang.String CLASS_Aligner3D_Mapsci "charite.christo.strap.extensions.Aligner3D_Mapsci"
public static final java.lang.String CLASS_Aligner3D_Matt "charite.christo.strap.extensions.Aligner3D_Matt"
public static final java.lang.String CLASS_Aligner3D_Mustang "charite.christo.strap.extensions.Aligner3D_Mustang"
public static final java.lang.String CLASS_Aligner3D_Smolign "charite.christo.strap.extensions.Aligner3D_Smolign"
public static final java.lang.String CLASS_AlignmentEntropy "charite.christo.strap.extensions.AlignmentEntropy"
public static final java.lang.String CLASS_AlignmentScore "charite.christo.strap.extensions.AlignmentScore"
public static final java.lang.String CLASS_AlignmentWriterHSSP "charite.christo.strap.extensions.AlignmentWriterHSSP"
public static final java.lang.String CLASS_Blaster_local_NCBI "charite.christo.blast.Blaster_local_NCBI"
public static final java.lang.String CLASS_Blaster_local_NCBI_gapped_PSI "charite.christo.blast.Blaster_local_NCBI_gapped_PSI"
public static final java.lang.String CLASS_Blaster_local_Wu "charite.christo.blast.Blaster_local_Wu"
public static final java.lang.String CLASS_Blaster_SOAP_ebi "charite.christo.blast.Blaster_SOAP_ebi"
public static final java.lang.String CLASS_ChAstexPROXY "charite.christo.protein.ChAstexPROXY"
public static final java.lang.String CLASS_ChJmolPROXY "charite.christo.protein.ChJmolPROXY"
public static final java.lang.String CLASS_CoiledCoil_PredictorRobinson "charite.christo.strap.extensions.CoiledCoil_PredictorRobinson"
public static final java.lang.String CLASS_ConsensusSequence "charite.christo.strap.extensions.ConsensusSequence"
public static final java.lang.String CLASS_CountResidues "charite.christo.strap.extensions.CountResidues"
public static final java.lang.String CLASS_CrudeSequenceDisSimilarity "charite.christo.protein.CrudeSequenceDisSimilarity"
public static final java.lang.String CLASS_DemoAssociateObjectsToProteins "charite.christo.strap.extensions.DemoAssociateObjectsToProteins"
public static final java.lang.String CLASS_DesktopUtils "charite.christo.DesktopUtils"
public static final java.lang.String CLASS_Dialog_bl2seq "charite.christo.strap.Dialog_bl2seq"
public static final java.lang.String CLASS_Dialog3DViewer "charite.christo.strap.Dialog3DViewer"
public static final java.lang.String CLASS_DialogAlign "charite.christo.strap.DialogAlign"
public static final java.lang.String CLASS_DialogAlignOneToAll "charite.christo.strap.DialogAlignOneToAll"
public static final java.lang.String CLASS_DialogBarChart "charite.christo.strap.DialogBarChart"
public static final java.lang.String CLASS_DialogBlast "charite.christo.strap.DialogBlast"
public static final java.lang.String CLASS_DialogCompareProteins "charite.christo.strap.DialogCompareProteins"
public static final java.lang.String CLASS_DialogCopyAnnotations "charite.christo.strap.DialogCopyAnnotations"
public static final java.lang.String CLASS_DialogDifferentResidues "charite.christo.strap.DialogDifferentResidues"
public static final java.lang.String CLASS_DialogDotPlot "charite.christo.strap.DialogDotPlot"
public static final java.lang.String CLASS_DialogExportAlignment "charite.christo.strap.DialogExportAlignment"
public static final java.lang.String CLASS_DialogExportProteins "charite.christo.strap.DialogExportProteins"
public static final java.lang.String CLASS_DialogExportWord "charite.christo.strap.DialogExportWord"
public static final java.lang.String CLASS_DialogFetchPdb "charite.christo.strap.DialogFetchPdb"
public static final java.lang.String CLASS_DialogFetchSRS "charite.christo.strap.DialogFetchSRS"
public static final java.lang.String CLASS_DialogGenbank "charite.christo.strap.DialogGenbank"
public static final java.lang.String CLASS_DialogHighlightPattern "charite.christo.strap.DialogHighlightPattern"
public static final java.lang.String CLASS_DialogImportMFA "charite.christo.strap.DialogImportMFA"
public static final java.lang.String CLASS_DialogInferCDS "charite.christo.strap.DialogInferCDS"
public static final java.lang.String CLASS_DialogManyInOneRow "charite.christo.strap.DialogManyInOneRow"
public static final java.lang.String CLASS_DialogNewProtein "charite.christo.strap.DialogNewProtein"
public static final java.lang.String CLASS_DialogNonRedundantSequenceSet "charite.christo.strap.DialogNonRedundantSequenceSet"
public static final java.lang.String CLASS_DialogPhylogeneticTree "charite.christo.strap.DialogPhylogeneticTree"
public static final java.lang.String CLASS_DialogPlot "charite.christo.strap.DialogPlot"
public static final java.lang.String CLASS_DialogPredictCoiledCoil "charite.christo.strap.DialogPredictCoiledCoil"
public static final java.lang.String CLASS_DialogPredictSecondaryStructures "charite.christo.strap.DialogPredictSecondaryStructures"
public static final java.lang.String CLASS_DialogPredictTmHelices2 "charite.christo.strap.DialogPredictTmHelices2"
public static final java.lang.String CLASS_DialogPredictTmHelicesMulti "charite.christo.strap.DialogPredictTmHelicesMulti"
public static final java.lang.String CLASS_DialogProteinList "charite.christo.strap.DialogProteinList"
public static final java.lang.String CLASS_DialogPublishAlignment "charite.christo.strap.DialogPublishAlignment"
public static final java.lang.String CLASS_DialogRenameProteins "charite.christo.strap.DialogRenameProteins"
public static final java.lang.String CLASS_DialogResidueAnnotationChanges "charite.christo.strap.DialogResidueAnnotationChanges"
public static final java.lang.String CLASS_DialogResidueAnnotationList "charite.christo.strap.DialogResidueAnnotationList"
public static final java.lang.String CLASS_DialogRestoreFromBackup "charite.christo.strap.DialogRestoreFromBackup"
public static final java.lang.String CLASS_DialogSelectionOfResidues "charite.christo.strap.DialogSelectionOfResidues"
public static final java.lang.String CLASS_DialogSelectionOfResiduesMain "charite.christo.strap.DialogSelectionOfResiduesMain"
public static final java.lang.String CLASS_DialogSimilarStructure "charite.christo.strap.DialogSimilarStructure"
public static final java.lang.String CLASS_DialogSortProteins "charite.christo.strap.DialogSortProteins"
public static final java.lang.String CLASS_DialogSubcellularLocalization "charite.christo.strap.DialogSubcellularLocalization"
public static final java.lang.String CLASS_DialogSuperimpose3D "charite.christo.strap.DialogSuperimpose3D"
public static final java.lang.String CLASS_Distance3DToCursor "charite.christo.strap.Distance3DToCursor"
public static final java.lang.String CLASS_Distance3DToHetero "charite.christo.strap.extensions.Distance3DToHetero"
public static final java.lang.String CLASS_DnaExonStart "charite.christo.strap.DnaExonStart"
public static final java.lang.String CLASS_EditDna "charite.christo.strap.EditDna"
public static final java.lang.String CLASS_FlavinePROXY "charite.christo.strap.science.FlavinePROXY"
public static final java.lang.String CLASS_Hydrophobicity "charite.christo.strap.extensions.Hydrophobicity"
public static final java.lang.String CLASS_Hyperrefs "charite.christo.Hyperrefs"
public static final java.lang.String CLASS_IndividualSequenceDisSimilarity "charite.christo.strap.extensions.IndividualSequenceDisSimilarity"
public static final java.lang.String CLASS_IntermediateSeq "charite.christo.strap.IntermediateSeq"
public static final java.lang.String CLASS_MultipleAligner_SPEM "charite.christo.strap.extensions.MultipleAligner_SPEM"
public static final java.lang.String CLASS_MultipleAlignerAlign_m "charite.christo.strap.extensions.MultipleAlignerAlign_m"
public static final java.lang.String CLASS_MultipleAlignerAmap "charite.christo.strap.extensions.MultipleAlignerAmap"
public static final java.lang.String CLASS_MultipleAlignerClustalW "charite.christo.strap.extensions.MultipleAlignerClustalW"
public static final java.lang.String CLASS_MultipleAlignerDialign "charite.christo.strap.extensions.MultipleAlignerDialign"
public static final java.lang.String CLASS_MultipleAlignerDialignT "charite.christo.strap.extensions.MultipleAlignerDialignT"
public static final java.lang.String CLASS_MultipleAlignerKalign "charite.christo.strap.extensions.MultipleAlignerKalign"
public static final java.lang.String CLASS_MultipleAlignerMafft "charite.christo.strap.extensions.MultipleAlignerMafft"
public static final java.lang.String CLASS_MultipleAlignerMuscle "charite.christo.strap.extensions.MultipleAlignerMuscle"
public static final java.lang.String CLASS_MultipleAlignerProbcons2 "charite.christo.strap.extensions.MultipleAlignerProbcons2"
public static final java.lang.String CLASS_MultipleAlignerT_Coffee "charite.christo.strap.extensions.MultipleAlignerT_Coffee"
public static final java.lang.String CLASS_PairAlignerJAlignerPROXY "charite.christo.strap.extensions.PairAlignerJAlignerPROXY"
public static final java.lang.String CLASS_PairAlignerNeoBioPROXY "charite.christo.strap.extensions.PairAlignerNeoBioPROXY"
public static final java.lang.String CLASS_PhylogeneticTree_Archaeopteryx "charite.christo.strap.extensions.PhylogeneticTree_Archaeopteryx"
public static final java.lang.String CLASS_PhylogeneticTree_TreeTop "charite.christo.strap.extensions.PhylogeneticTree_TreeTop"
public static final java.lang.String CLASS_Prione "charite.christo.strap.science.Prione"
public static final java.lang.String CLASS_Proteasome "charite.christo.strap.science.Proteasome"
public static final java.lang.String CLASS_Protein3d "charite.christo.protein.Protein3d"
public static final java.lang.String CLASS_ProteinsSorter_with3D_without3D "charite.christo.strap.extensions.ProteinsSorter_with3D_without3D"
public static final java.lang.String CLASS_Pymol "charite.christo.protein.Pymol"
public static final java.lang.String CLASS_ResidueAnnotationView "charite.christo.strap.ResidueAnnotationView"
public static final java.lang.String CLASS_ResidueHydrophobicity_TOPPRED "charite.christo.strap.extensions.ResidueHydrophobicity_TOPPRED"
public static final java.lang.String CLASS_ResidueSolventAccessibility "charite.christo.strap.extensions.ResidueSolventAccessibility"
public static final java.lang.String CLASS_ResidueValues_from_textfile "charite.christo.strap.extensions.ResidueValues_from_textfile"
public static final java.lang.String CLASS_SecondaryStructure_Jnet "charite.christo.strap.extensions.SecondaryStructure_Jnet"
public static final java.lang.String CLASS_SecondaryStructure_NNPREDICT "charite.christo.strap.extensions.SecondaryStructure_NNPREDICT"
public static final java.lang.String CLASS_SecondaryStructure_Sopma "charite.christo.strap.extensions.SecondaryStructure_Sopma"
public static final java.lang.String CLASS_SequenceDisSimilarityAsAligned "charite.christo.strap.extensions.SequenceDisSimilarityAsAligned"
public static final java.lang.String CLASS_SimilarPdb_blastEBI "charite.christo.protein.SimilarPdb_blastEBI"
public static final java.lang.String CLASS_StrapHotswap "charite.christo.strap.StrapHotswap"
public static final java.lang.String CLASS_Superimpose_CEPROXY "charite.christo.strap.extensions.Superimpose_CEPROXY"
public static final java.lang.String CLASS_Superimpose_GangstaPlus "charite.christo.strap.extensions.Superimpose_GangstaPlus"
public static final java.lang.String CLASS_Superimpose_GoedePROXY "charite.christo.strap.extensions.Superimpose_GoedePROXY"
public static final java.lang.String CLASS_Superimpose_LajollaProteinPROXY "charite.christo.strap.extensions.Superimpose_LajollaProteinPROXY"
public static final java.lang.String CLASS_Superimpose_LajollaRNA "charite.christo.strap.extensions.Superimpose_LajollaRNA"
public static final java.lang.String CLASS_Superimpose_native_CE "charite.christo.strap.extensions.Superimpose_native_CE"
public static final java.lang.String CLASS_Superimpose_TM_align "charite.christo.strap.extensions.Superimpose_TM_align"
public static final java.lang.String CLASS_Texshade "charite.christo.strap.Texshade"
public static final java.lang.String CLASS_TransmembraneHelix_DAS "charite.christo.strap.extensions.TransmembraneHelix_DAS"
public static final java.lang.String CLASS_TransmembraneHelix_HMMTOP "charite.christo.strap.extensions.TransmembraneHelix_HMMTOP"
public static final java.lang.String CLASS_TransmembraneHelix_MEMSAT "charite.christo.strap.extensions.TransmembraneHelix_MEMSAT"
public static final java.lang.String CLASS_TransmembraneHelix_ORIENTM "charite.christo.strap.extensions.TransmembraneHelix_ORIENTM"
public static final java.lang.String CLASS_TransmembraneHelix_Phobius "charite.christo.strap.extensions.TransmembraneHelix_Phobius"
public static final java.lang.String CLASS_TransmembraneHelix_PRED_TMR "charite.christo.strap.extensions.TransmembraneHelix_PRED_TMR"
public static final java.lang.String CLASS_TransmembraneHelix_SOSUI "charite.christo.strap.extensions.TransmembraneHelix_SOSUI"
public static final java.lang.String CLASS_TransmembraneHelix_SPLIT3 "charite.christo.strap.extensions.TransmembraneHelix_SPLIT3"
public static final java.lang.String CLASS_TransmembraneHelix_SPLIT4 "charite.christo.strap.extensions.TransmembraneHelix_SPLIT4"
public static final java.lang.String CLASS_TransmembraneHelix_THUMBUP "charite.christo.strap.extensions.TransmembraneHelix_THUMBUP"
public static final java.lang.String CLASS_TransmembraneHelix_TMAP "charite.christo.strap.extensions.TransmembraneHelix_TMAP"
public static final java.lang.String CLASS_TransmembraneHelix_TMAP_MULTI "charite.christo.strap.extensions.TransmembraneHelix_TMAP_MULTI"
public static final java.lang.String CLASS_TransmembraneHelix_TMHMM2 "charite.christo.strap.extensions.TransmembraneHelix_TMHMM2"
public static final java.lang.String CLASS_TransmembraneHelix_TMPRED "charite.christo.strap.extensions.TransmembraneHelix_TMPRED"
public static final java.lang.String CLASS_TransmembraneHelix_TOPPRED "charite.christo.strap.extensions.TransmembraneHelix_TOPPRED"
public static final java.lang.String CLASS_TransmembraneHelix_WaveTM "charite.christo.strap.extensions.TransmembraneHelix_WaveTM"
public static final int CLOSE_ALLOWED 1
public static final int CLOSE_ASK 64
public static final int CLOSE_CHILDS 32
public static final int CLOSE_CtrlW 4
public static final int CLOSE_CtrlW_ESC 12
public static final int CLOSE_DISPOSE 2
public static final int CLOSE_DISPOSE_TABS 514
public static final int CLOSE_ESC 8
public static final int CLOSE_MASK 1023
public static final int CLOSE_NO_REMOVE 128
public static final int CLOSE_RM_CHILDS 16
public static final java.lang.String CMD_CLEAR "CC$$CLR"
public static final java.lang.String CMD_MENU_SELECTION_CHANGED "CC$$MSC"
public static final java.lang.String CMD_MIDDLE_MOUSE_BUTTON "CC$$MMB"
public static final int COLOR_REF 255
public static final int COLOR_REF_GRAY 12632256
public static final long COMPLETION_DIRECTORY_PATH 2097152L
public static final long COMPLETION_FILES_IN_WORKING_DIR 4194304L
public static final int DEFAULT_BACKGROUND 15658734
public static final int DEFAULT_BACKGROUND_D 10921638
public static final java.lang.String DIR_ANNOTATIONS "annotations"
public static final java.lang.String DIR_GAPS "gaps"
public static final int DISPOSE_CtrlW 6
public static final java.lang.String DO_NOT_ASK "DO_NOT_ASK"
public static final char DOCTYPE_HTML 72
public static final char DOCTYPE_JAVADOC 74
public static final char DOCTYPE_TUTORIAL 84
public static final int DURATION 1
public static final int EDT 1
public static final int EM 9
public static final long ENABLE_EVT_MASK 131260L
public static final int EX 15
public static final java.lang.String FEATURE_ACTIVE_SITE "Active_site"
public static final java.lang.String GREEN_DONE " \u001b[42mDone\u001b[0m "
public static final java.lang.String GREEN_SUCCESS "\u001b[42mSuccess\u001b[0m "
public static final int HETERO_CA 541147936
public static final int HETERO_CO 542065440
public static final int HETERO_D2O 542061124
public static final int HETERO_DDO 542065732
public static final int HETERO_DOD 541347652
public static final int HETERO_FE 541410848
public static final int HETERO_H2O 542061128
public static final int HETERO_HHO 542066760
public static final int HETERO_HOH 541609800
public static final int HETERO_MG 541543712
public static final int HETERO_MN 542002464
public static final int HETERO_NA 541150752
public static final int HETERO_NI 541675040
public static final int HETERO_NM 541937184
public static final int HETERO_ODD 541344847
public static final int HETERO_OHH 541608015
public static final int HETERO_SE 541414176
public static final int HETERO_ZN 542005792
public static final long HIGHLIGHT_DOT_MATCHES_ANY 256L
public static final long HIGHLIGHT_IGNORE_CASE 64L
public static final long HIGHLIGHT_IGNORE_LEN_OF_BLANK 512L
public static final long HIGHLIGHT_NEVER_REMOVE 32768L
public static final long HIGHLIGHT_NOT_IN_SCROLLBAR 8192L
public static final long HIGHLIGHT_REMOVE_IF_TEXT_CHANGES 1024L
public static final long HIGHLIGHT_REPAINT 4096L
public static final long HIGHLIGHT_SKIP_BLANKS 128L
public static final long HIGHLIGHT_STYLE_MASK 63L
public static final long HIGHLIGHT_STYLE_RRECT 1L
public static final long HIGHLIGHT_STYLE_UL 3L
public static final long HIGHLIGHT_STYLE_WAVE 2L
public static final long HIGHLIGHT_UPDATE_IF_TEXT_CHANGES 2048L
public static final long HIGHLIGHT_UPDATE_ON_MOUSE_ENTER 16384L
public static final java.lang.String IC_1 "1"
public static final java.lang.String IC_3D "3d"
public static final java.lang.String IC_ADD "plus"
public static final java.lang.String IC_ALIGN "formatting_right"
public static final java.lang.String IC_ANNO "attach"
public static final java.lang.String IC_APPLY16 "apply16"
public static final java.lang.String IC_ATTACH "attach"
public static final java.lang.String IC_BATCH "services"
public static final java.lang.String IC_BG_GLASS "tile_glass"
public static final java.lang.String IC_BLANK "32x32"
public static final java.lang.String IC_BUG "bug"
public static final java.lang.String IC_CAMERA "compact_camera"
public static final java.lang.String IC_CLIPBOARD "clipboard"
public static final java.lang.String IC_CLOSE "close"
public static final java.lang.String IC_COILEDCOIL "coiledCoil"
public static final java.lang.String IC_COLOR "color"
public static final java.lang.String IC_COMPARE "scales"
public static final java.lang.String IC_COMPUTE "services"
public static final java.lang.String IC_CONSOLE "console"
public static final java.lang.String IC_CONTROLPANEL "cursor_hand"
public static final java.lang.String IC_COPY "copy"
public static final java.lang.String IC_crossed_through "big_crossedThrough"
public static final java.lang.String IC_CURSOR_HAND "cursor_hand"
public static final java.lang.String IC_CURSOR16 "ledgreen16"
public static final java.lang.String IC_CUSTOM "settings2"
public static final java.lang.String IC_CUSTOM24 "settings2_26"
public static final java.lang.String IC_CYGWIN "cygwin"
public static final java.lang.String IC_DIRECTORY "folder"
public static final java.lang.String IC_DNA "dna_helix"
public static final java.lang.String IC_DND "copy"
public static final java.lang.String IC_DOTPLOT "dotplot"
public static final java.lang.String IC_DOWNLOAD "download"
public static final java.lang.String IC_EDIT "edit"
public static final java.lang.String IC_EXPORT "export"
public static final java.lang.String IC_FLAVIN "flavin"
public static final java.lang.String IC_HAPPY "happy"
public static final java.lang.String IC_HELIX "helix"
public static final java.lang.String IC_HIDE "CC%%hide"
public static final java.lang.String IC_HOME "home"
public static final java.lang.String IC_HOURGLASS "sandglass"
public static final java.lang.String IC_IMPORT "import"
public static final java.lang.String IC_INFO "info"
public static final java.lang.String IC_JAVA "outline"
public static final java.lang.String IC_JMOL "jmol"
public static final java.lang.String IC_JV "jV"
public static final java.lang.String IC_KEYBOARD "keyboard"
public static final java.lang.String IC_KILL "delete"
public static final java.lang.String IC_MAC_FINDER "mac_finder"
public static final java.lang.String IC_MAC_OS "mac_os"
public static final java.lang.String IC_MEASURE "ruler"
public static final java.lang.String IC_MOVIE "movie"
public static final java.lang.String IC_NOTEPAD "edit"
public static final java.lang.String IC_ORIGINALCOORDINATES "home"
public static final java.lang.String IC_PDF "pdf"
public static final java.lang.String IC_PLOT "line_chart"
public static final java.lang.String IC_PLUGIN "lego"
public static final java.lang.String IC_PROTEASOME "proteasome"
public static final java.lang.String IC_PUBMED "pubmed"
public static final java.lang.String IC_PYMOL "pymol"
public static final java.lang.String IC_RESCUE "lifebuoy"
public static final java.lang.String IC_SAVE_AS "save_as"
public static final java.lang.String IC_SCISSOR "scissors"
public static final java.lang.String IC_SEARCH "search"
public static final java.lang.String IC_SHEET "prediction_E32x32"
public static final java.lang.String IC_SHOW "visible"
public static final java.lang.String IC_STOP "stop"
public static final java.lang.String IC_STRAP "formatting_right"
public static final java.lang.String IC_STRUCTURE "big_proteinStructure32x32"
public static final java.lang.String IC_STRUCTURE_BIG "big_proteinStructure"
public static final java.lang.String IC_SUPERIMPOSE "stack_of_photos"
public static final java.lang.String IC_TM_HELIX "tmhelix"
public static final java.lang.String IC_TO_END "end"
public static final java.lang.String IC_TO_START "skip_to_start"
public static final java.lang.String IC_TOOLS "settings2"
public static final java.lang.String IC_TRAFFICLIGHTGREEN "ledgreen16"
public static final java.lang.String IC_TRANSMEMBRANE "transmembrane"
public static final java.lang.String IC_TREE "tree"
public static final java.lang.String IC_UMBRELLA "umbrella"
public static final java.lang.String IC_UNDERLINE "border_color"
public static final java.lang.String IC_UNHAPPY "unhappy"
public static final java.lang.String IC_UNIPROT "uniprot"
public static final java.lang.String IC_UNSURE "unsure"
public static final java.lang.String IC_WINDOWS "windows"
public static final java.lang.String IC_WINWORD "winword"
public static final java.lang.String IC_WORD "word"
public static final java.lang.String IC_WWW "globe"
public static final java.lang.String IC_WWW_SETTINGS "wifi"
public static final java.lang.String IC_WWW16 "browser16"
public static final java.lang.String IC_ZIP "zip"
public static final int ICON_HEIGHT 32
public static final java.lang.String IMAGE_CUSTOM_MAC_MOUSE "Image:Cust_mac_mouse*"
public static final int INT_NAN -2147483648
public static final java.lang.String KEEP_DAYS_IN_CACHE "KEEP_DAYS_IN_CACHE="
public static final java.lang.String KEY_ACCELERATOR "CC$$KAC"
public static final java.lang.String KEY_ACTION_COMMAND "CC$$AC"
public static final java.lang.String KEY_AVOID_GARBAGE_COLLECT "CC$$AGC"
public static final java.lang.String KEY_BACKGROUND "CC$$BG"
public static final java.lang.String KEY_CACHE_TEXT "CC$$KTC"
public static final java.lang.String KEY_CLASS_NAME "CC$$CLN"
public static final java.lang.String KEY_CLONED_FROM "CC$$CF"
public static final java.lang.String KEY_CLONES "CC$$C"
public static final java.lang.String KEY_CLOSE_HOOKS "CC$$D"
public static final java.lang.String KEY_CLOSE_OPT "CC$$CO"
public static final java.lang.String KEY_COLOR "CC$$KC"
public static final java.lang.String KEY_CONTEXT_OBJECTS "CC$$KCO"
public static final java.lang.String KEY_CTRL_PNL "CC$$CP"
public static final java.lang.String KEY_DEPENDS_ON "CC$$DO"
public static final java.lang.String KEY_DRAG_SRC_ID "CC$$DSID"
public static final java.lang.String KEY_DRAG_TARGET_DIRCTORY "CC$$KDTD"
public static final java.lang.String KEY_DROP_TARGET_REDIRECT "CC$$KDTR"
public static final java.lang.String KEY_EAST_PANEL "CC$EP"
public static final java.lang.String KEY_EMAIL "email"
public static final java.lang.String KEY_ENABLED "CC$4"
public static final java.lang.String KEY_ENABLED_IF_ENABLED "CC$$EIE"
public static final java.lang.String KEY_FEHLER_1 "CC$$FEHLER_DOPPELT"
public static final java.lang.String KEY_FEHLER_2 "CC$$FEHLER_DOPPELT"
public static final java.lang.String KEY_FOREGROUND "CC$$FG"
public static final java.lang.String KEY_FRAME "CC$KF"
public static final java.lang.String KEY_FRAME_TITLE "CC$$FT"
public static final java.lang.String KEY_GET_MENUBAR "CC$$KMB"
public static final java.lang.String KEY_GET_VIEW "CC$$KGV"
public static final java.lang.String KEY_HIDE_IF_EXEC_FORBIDDEN "CC$DIEF"
public static final java.lang.String KEY_IF_EMPTY "CC$$EMPTY"
public static final java.lang.String KEY_IGNORE_SELECTION_EVT "CC$$ISE"
public static final java.lang.String KEY_IMAGE_FILE_NAME "CC$$IFN"
public static final java.lang.String KEY_IS_PRINTING "CC$IP"
public static final java.lang.String KEY_IS_RESIZING "CC$$IRS"
public static final java.lang.String KEY_LOOKS_LIKE_DIVIDER "CC$$LLD"
public static final java.lang.String KEY_MENU_ID "CC$$mid"
public static final java.lang.String KEY_MODEL "CC$$KM"
public static final java.lang.String KEY_MODI_COUNT "CC$$MC"
public static final java.lang.String KEY_NEEDS_REVALIDATE "CC$NR"
public static final java.lang.String KEY_NO_PAINT_IF_ADJUSTING "CC$$NPIA"
public static final java.lang.String KEY_NORTH_PANEL "CC$NP"
public static final java.lang.String KEY_NOT_YET_PAINTED "CC$$NYP"
public static final java.lang.String KEY_OPTIONS "CC$$OPT"
public static final java.lang.String KEY_OPTS_SCROLLPANE "CC$$KSPO"
public static final java.lang.String KEY_PANEL "CC$KP"
public static final java.lang.String KEY_PREF_SIZE "CC$$PRS"
public static final java.lang.String KEY_PRINTABLE_COMPONENTS "CC$$PRC"
public static final java.lang.String KEY_PROGRESS "CC$$PRGRS "
public static final java.lang.String KEY_RUN_AFTER "CC$$RA"
public static final java.lang.String KEY_SCALE_FACTOR "CC$KSF"
public static final java.lang.String KEY_SCROLL_EVEN_IF_INVISIBLE "CC$$SEII"
public static final java.lang.String KEY_SCROLL_INCR_V "CC$$SI"
public static final java.lang.String KEY_SCROLL_TO_END "CC$$SCE"
public static final java.lang.String KEY_SOUTH_PANEL "CC$SP"
public static final java.lang.String KEY_TIP_LOCATION "CC$TL"
public static final java.lang.String KEY_TITLE "TITLE"
public static final java.lang.String KEY_TOOLTIP "CC$$TT"
public static final java.lang.String KEY_VISIBLE_COMPONENT "CC$$VC"
public static final java.lang.String KEY_WEST_PANEL "CC$WP"
public static final java.lang.String KOPT_ALREADY_PAINTED "CC$$AP"
public static final java.lang.String KOPT_COLOR_FROM_PARENT "CC$$CFP"
public static final java.lang.String KOPT_CONTAINS_AA "CC$$CAA"
public static final java.lang.String KOPT_CONTAINS_NT "CC$$CNT"
public static final java.lang.String KOPT_DISABLE_EV "CC$$DEV"
public static final java.lang.String KOPT_DISABLE_IF_CHILDS_DISABLED "OPT$$DICD"
public static final java.lang.String KOPT_DO_NOT_INVALIDATE "OPT$$NIV"
public static final java.lang.String KOPT_DRAGS_PARWINDOW "CC$$KDPW"
public static final java.lang.String KOPT_DRAW_UNDOCKABLE "CC$$DUD"
public static final java.lang.String KOPT_HIDE_IF_DISABLED "OPT$$HID"
public static final java.lang.String KOPT_IS_IN_TABLE_HEADER "OPT$$TH"
public static final java.lang.String KOPT_IS_SELECTED "CC$$IS"
public static final java.lang.String KOPT_IS_VALIDATE_ROOT "OPT$$IVD"
public static final java.lang.String KOPT_NO_EVENT "CC$$NDE"
public static final java.lang.String KOPT_NO_ICON "CC$$KNI"
public static final java.lang.String KOPT_NOT_FOR_MENUBAR "OPT$$NMB"
public static final java.lang.String KOPT_NOT_INDICATE_TOO_SMALL "OPT$$NITS"
public static final java.lang.String KOPT_NOT_PAINTED_IF_DISABLED "OPT$$NPID"
public static final java.lang.String KOPT_SUPPORTS_CTRL_F "CC$$CtrlF"
public static final java.lang.String KOPT_TRACKS_VIEWPORT_HEIGHT "OPT$$TVH"
public static final java.lang.String KOPT_TRACKS_VIEWPORT_WIDTH "OPT$$TVW"
public static final java.lang.String KOPT_UNDOCKABLE "CC$$UD"
public static final int LEN_PDB_ID 4
public static final int LEN_UNIPROT 6
public static final int LENGTH_PDBIDS 4
public static final java.lang.String LOG_SHOW "CEx$$L"
public static final double LOG10 2.302585092994046
public static final int MASK_KEYMODIFIERS 47
public static final int MAX_INT 2147483647
public static final java.lang.String MAY_PROVIDE_TREE_VALUE "$CCMPRC"
public static final int MIN_INT -2147483648
public static final java.lang.String MOVIE_Context_Menu "MOVIE:Context_Menu*"
public static final java.lang.String MOVIE_Drag_protein_to_3D "MOVIE:Drag_protein_to_3D*"
public static final java.lang.String MOVIE_Drag_to_another_STRAP "MOVIE:Drag_to_another_STRAP*"
public static final java.lang.String MOVIE_Export_Proteins "MOVIE:Export_Proteins*"
public static final java.lang.String MOVIE_Load_Proteins "MOVIE:Load_Proteins*"
public static final java.lang.String MOVIE_Load_Proteins_web_pdb "MOVIE:Load_Proteins_from_PDB_site*"
public static final java.lang.String MOVIE_Load_Proteins_web_uniprot "MOVIE:Load_Proteins_from_web_resource*"
public static final java.lang.String MOVIE_Sequence_Features_in_3D "MOVIE:Sequence_Features_in_3D*"
public static final int NO_OPTION 0
public static final java.lang.String OPAQUE_FALSE "CC$$OPAQ"
public static final java.lang.String OPAQUE_TRUE "CC$$OPAQt"
public static final int PAUSE 2
public static final int PROTEIN_MIN_FILE_SZE 10
public static final java.lang.String PROVIDE_DND_FILES "CC$$PDnDF"
public static final java.lang.String PROVIDE_FILES "CC$$PFF"
public static final java.lang.String PROVIDE_HIGHLIGHTS "CC$$pHL"
public static final java.lang.String PROVIDE_ID_FOR_JLIST "CC$$PKFJL"
public static final java.lang.String PROVIDE_JORTHO_WORD_LIST "CC$$jowl"
public static final java.lang.String PROVIDE_JPopupMenu "CC$$pCM"
public static final java.lang.String PROVIDE_JTREE_CHILDS "CC$$PJTC"
public static final java.lang.String PROVIDE_JTREE_NODE_ID "CC$$PJTNI"
public static final java.lang.String PROVIDE_TEXT_FOR_SORTING "CC$$PTSA"
public static final java.lang.String PROVIDE_WORD_COMPLETION_LIST "CC$$wcl"
public static final java.lang.String PUBMED_CHARITE "holding=idecuhmlib_fft&"
public static final java.lang.String RED_CAUGHT_IN "\u001b[41mCaught in\u001b[0m "
public static final java.lang.String RED_ERROR "\u001b[45m\u001b[41mError\u001b[0m "
public static final java.lang.String RED_WARNING "\u001b[45m\u001b[41mWarning\u001b[0m "
public static final java.lang.String REGEX_NO_FILE_NAME "[^A-Za-z0-9+_.]"
public static final java.lang.String REP_PARENT_WINDOW "CC$$RPW"
public static final java.lang.String sATOM_TYPE_CA "ATOM_TYPE_CA"
public static final java.lang.String sATOM_TYPE_CB "ATOM_TYPE_CB"
public static final java.lang.String SPROGRESS "|/-\\"
public static final java.lang.String STRAPOUT "strapOut"
public static final java.lang.String STRAPTMP "strapTmp"
public static final int TF_HEIGHT 19
public static final java.lang.String TMP_DOWNLOAD_SFX "TMP"
public static final java.lang.String TRASH "trash"
public static final long ULREFS_BG 32768L
public static final long ULREFS_DISABLE 131072L
public static final long ULREFS_DISABLE_UNTIL_MOUSE 262144L
public static final long ULREFS_GO 4096L
public static final long ULREFS_IF_NECESSARY 8192L
public static final long ULREFS_NO_ICON 524288L
public static final long ULREFS_NOT_CLICKABLE 65536L
public static final long ULREFS_PMID_DOWNLOAD 2048L
public static final long ULREFS_WEB_COLORS 1048576L
public static final java.lang.String UNNAMED "unnamed"
public static final java.lang.String UPLOAD_DOC "cd ~/.StrapAlign/; tar -czf doc.tgz doc/\nscp ~/.StrapAlign/doc.tgz $STRAP_DIR_B \nSSH_B \'pushd ~/public_html/strap/ && tar -xzf doc.tgz && popd \' \n"
public static final java.lang.String URL_METANNOGEN "http://www.bioinformatics.org/strap/metannogen/"
public static final java.lang.String URL_RCSB_IMAGES "http://www.rcsb.org/pdb/images/"
public static final java.lang.String URL_STRAP "http://www.bioinformatics.org/strap/"
public static final java.lang.String URL_STRAP_DATAFILES "http://www.bioinformatics.org/strap/dataFiles/"
public static final java.lang.String URL_STRAP_DOC "http://www.bioinformatics.org/strap/doc/"
public static final java.lang.String URL_STRAP_JARS "http://www.bioinformatics.org/strap/otherPackages/"
public static final java.lang.String URL_STRAP_JNLP "http://www.bioinformatics.org/strap//strap.jnlp"
public static final java.lang.String URL_STRAP_SRC "http://www.bioinformatics.org/strap/SourcePackages/"
public static final java.lang.String WATCH_MOVIE "WM_"
public static final int WHEN 0
public static final java.lang.String YELLOW_DEBUG "\u001b[43mDEBUG> \u001b[0m"

charite.christo.ChDelay
public static final byte ADD_COMPONENT 29
public static final byte ADDTAB 19
public static final byte BG_COLOR 15
public static final byte CONTENTS_CHANGED 4
public static final int DONT_SET_DURATION 4
public static final byte ENABLED 1
public static final byte FG_COLOR 14
public static final byte MAX_VARIABLE 34
public static final byte REPAINT 2
public static final byte RESTORE_BACKGROUND 8
public static final byte REVALIDATE 20
public static final byte RUN 21
public static final byte RUNNABLE_ARG 28
public static final byte SCROLL_DOWN 3
public static final byte SCROLL_UP 32
public static final byte SET_JLIST_II 11
public static final byte SET_PREF_SIZE 5
public static final byte UPDATEUI 17
public static final byte VISIBLE 6

charite.christo.ChEnv
public static final int WITH_DOLLAR 1
public static final int WITH_FILEPATH 2
public static final int WITHOUT_DOLLAR 0

charite.christo.ChExec
public static final java.lang.String ACTION_ERROR "ACTION_ERROR"
public static final java.lang.String ACTION_TERMINATED "ACTION_TERMINATED"
public static final long CYGWIN_DLL 8L
public static final java.lang.String CYGWINSH "CYGWINSH"
public static final long DEBUG 1024L
public static final java.lang.String EXE_TM_ALIGN "TMalign2"
public static final long IGNORE_ERROR 4L
public static final long LOG 32L
public static final long NOT_TO_DENY_LIST 512L
public static final long PLEASE_INSTALL_MANUALLY 128L
public static final long SHOW_STREAMS 16L
public static final long STDERR 2L
public static final long STDOUT 1L
public static final long STDOUT_IN_TEXT_BOX 64L
public static final long WITHOUT_ASKING 256L

charite.christo.ChFileChooser
public static final long BUT_PROJECT_FOLDER 64L
public static final long CLOSE 2L
public static final long FOLDERS 8L
public static final java.lang.String KEY_FPANE "CFC$$KFP"
public static final long MULTI 4L
public static final long NOT_ALL 16L

charite.christo.ChFrame
public static final long ALWAYS_ON_TOP 2048L
public static final long AT_CLICK 32768L
public static final long AT_CLICK_R 8192L
public static final long CENTER 16384L
public static final long DISPOSE_ON_CLOSE 8388608L
public static final long DRAG 8589934592L
public static final long ICONIFY_ON_CLOSE 4194304L
public static final long PACK 524288L
public static final long PACK_SMALLER_SCREEN 17179869184L
public static final long SCROLLPANE 34359738368L
public static final long SHOW_IF_NOT_ICONIFIED 1073741824L
public static final long SHOW_IF_VISIBLE 2147483648L
public static final long SHUT_DOWN_ON_CLOSE 16777216L
public static final long STAGGER 65536L
public static final long SYSTEM_EXIT_WHEN_ALL_CLOSED 2097152L
public static final long TO_FRONT 4096L
public static final long TO_ICON 131072L

charite.christo.ChIcon
public static final int FILTER_BRIGHTER_4 2
public static final int FILTER_GRAY 1
public static final int FILTER_MONOCHROME 4
public static final int FILTER_WHITE_TO_TRANSPARENT 3
public static final java.lang.String TRANSPARENT "CI$$T"

charite.christo.ChJList
public static final java.lang.String KEY_ENABLE_IF_SELECTED "CJL$$ES"
public static final java.lang.String KEY_NO_HELP_ON_RIGHT_CLICK "CJL$$NH"
public static final java.lang.String KEY_UPDATE_ENABLED "CJL$$UE"
public static final int OPTIONS_FILES 8243
public static final long SEL_STRSTR 2L
public static final long SEL_STRSTR_IC 4L

charite.christo.ChJOrthoPROXY
public static final java.lang.String DICT_FILE "dictionary_en.ortho"
public static final java.lang.String JTEXTCOMPONENT "CJO$$jtc"
public static final java.lang.String RUN_DOWNLOAD_WORDS "CJOP$$DW"

charite.christo.ChJScrollPane
public static final int AS_TXT 6
public static final int EXPAND_NODES 1
public static final int INV_SELECTION 2
public static final java.lang.String KEY_RUN_AS_TEXT "CJSP$$AT"
public static final int UPDATE 4

charite.christo.ChJTable
public static final int BACKSPACE_DEL_ITEM 1048576
public static final int CHJTABLE_BACKSPACE_DEACTIVATED 131072
public static final int CHJTABLE_CLEAR 262144
public static final int CHJTABLE_FOCUSED_BLACK 32768
public static final int CHJTABLE_SHOW_BUT_MAXIM 65536
public static final int CLASS_RENDERER 8
public static final int COLUMN_EXTRA_WIDTH 3
public static final java.lang.String COLUMN_MARGIN_CHANGED "ChJTable_COLUMN_MARGIN_CHANGED"
public static final java.lang.String COLUMN_MOVED "ChJTable_COLUMN_MOVED"
public static final int COLUMN_WIDTH_4_DIGITS 75
public static final int DEFAULT_RENDERER 1
public static final int DRAG_ENABLED 8192
public static final int EX_ROW_HEIGHT 4
public static final int EXX_ROW_HEIGHT 64
public static final int FILE_POPUP 32
public static final int FILE_TRANSFER_HANDLER 1024
public static final int ICON_ROW_HEIGHT 2
public static final int IMMUTABLE 524288
public static final int NO_REORDER 16384
public static final int RTT 16
public static final int SET_VALUE_SELECTED_ROWS 4096
public static final int SINGLE_SELECTION 2048
public static final int TABLE_ROW_SORTER 128

charite.christo.ChJTextPane
public static final java.lang.String KEYBINDINGS "F1 Help CTRL-key actions: C Copy V Paste F Find P Print +/- Zoom * Font quality R shell script"

charite.christo.ChJTree
public static final java.lang.String KEY_EXPAND "CT$$KE"
public static final java.lang.String KEY_NUM_EXPAND "CT$$NE"

charite.christo.ChLogger
public static final int NO_LINE_NUMBERS 4
public static final java.lang.String RUN_PREPROCESS "ChLog$$prepr"
public static final int SAVE_DISPLAY_FILE 2

charite.christo.ChMap<K,V>
public static final int TYPE_TreeMap 2
public static final int TYPE_WeakHashMap 4
public static final int WORD_COMPLETION_K 8
public static final int WORD_COMPLETION_V 16

charite.christo.ChMsg
public static final java.lang.String KEY_RESULT_ICON "CM$$KRLI"
public static final java.lang.String KEY_RESULT_LABEL "CM$$KRL"
public static final java.lang.String SFX_COMPUTING " - computing ..."
public static final int SOUND_FAILURE 4
public static final int SOUND_SUCCESS 3

charite.christo.ChMsgDia
public static final int OK 2
public static final int YES_NO 1

charite.christo.ChPanel
public static final java.lang.String KEY_REPRESENT_COMPONENT "CP$$RC"

charite.christo.ChPdfUtilsPROXY
public static final java.lang.String STRIP_TEXT "TXT"

charite.christo.ChPubmed
public static final int ABSTRACT 2
public static final java.lang.String ACTION_FULL_TEXT_ASSOCIATED "CPM$$FTA"
public static final int AUTO 6
public static final int GO 5
public static final int LIST 0
public static final int PDF 1
public static final int PDF_TITLE 7
public static final int PDF2TXT 4
public static final long SHOWABSTRACT_FULL_TEXT 2L
public static final int UNIPROT 3

charite.christo.ChRegex
public static final java.lang.String NO_MATCH "no match"

charite.christo.ChRenderer
public static final int BUT_WIDTH 9
public static final int CLASS_NAMES 16
public static final java.lang.String CMD_FOND_NAME "FONT_NAME"
public static final java.lang.String KEY_CB_SELECTED "CCR$$_6"
public static final java.lang.String KEY_EDITED_COL "CCR$$_11"
public static final java.lang.String KEY_EDITED_ROW "CCR$$_10"
public static final java.lang.String KEY_EDITOR_COMPONENT "CCR$$_7"
public static final java.lang.String KEY_NOT_EDITABLE_BG "CCR$$P"
public static final java.lang.String KEY_RENDERER_COMPONENT "CCR$$_3"
public static final java.lang.String KEY_TO_CLOSE "CCR$$CLOSE"
public static final java.lang.String KEY_TOGGLE_SELECTED "CCR$$_4"
public static final java.lang.String KOPT_FULL_FILE_PATH "CCR$$FP"
public static final java.lang.String KOPT_NO_CHANGE_FG_AND_BG_IF_SELECTED "CCR$$_12"
public static final int LAST_PATH_COMPONENT_DOT 2
public static final int LAST_PATH_COMPONENT_SLASH 1
public static final int SMALL_CLOSE 1
public static final int SMALL_MAXIM 2
public static final long STRIKE_THROUGH_THICK 4L
public static final long STRIKE_THROUGH_V 2L

charite.christo.ChRunnable
public static final java.lang.String APPEND "CR$$A"
public static final java.lang.String COLUMN_TITLE "CR$$RCL"
public static final java.lang.String DOWNLOAD_FINISHED "CR$$DF"
public static final java.lang.String GET_PANEL "CR$$GP"
public static final java.lang.String ICON "CR$$IC"
public static final java.lang.String INTERPRET_LINE "CR$$IL"
public static final java.lang.String IS_DRAG4XY "CR$$IDR"
public static final java.lang.String ITEM_TEXT "CR$$IT"
public static final java.lang.String MODIFY_RENDERER_COMPONENT "CR$$MRC"
public static final java.lang.String PROGRESS "CR$$PRGRS"
public static final java.lang.String REPAINT_CURSOR "CR$$RCURS"
public static final java.lang.String SAY_DOWNLOADING "CR$$logDL"
public static final java.lang.String SET_ICON_IMAGE "CR$$SII"
public static final java.lang.String SET_TREE_VALUE "CR$$SRC"
public static final java.lang.String SHOW_IN_FRAME "CR$$SIF"
public static final java.lang.String TAB_TEXT "CR$$TAB"
public static final java.lang.String TIP_TEXT "CR$$TT"

charite.christo.ChScriptPanel
public static final java.lang.String RUN_SCRIPT "CSC$$RS"

charite.christo.ChSet<E>
public static final long IDENTITY 2L
public static final long WEAK_REFERENCE 1L

charite.christo.ChSprite
public static final int SPEED_SINUS 2

charite.christo.ChStdout
public static final java.lang.String ACTION_DATA_TRANSFER "CS$$dqf"

charite.christo.ChTableLayout
public static final java.lang.String COLUMN_ADDED "CTL$$CA"
public static final java.lang.String COLUMN_REMOVED "CTL$$CRM"
public static final java.lang.String KEY_HEIGHT_SOUTH_PANEL "$CTL$$HSP"
public static final java.lang.String KEY_OFFSET_COMPONENT "CTL$$OC"

charite.christo.ChTabPane
public static final java.lang.String ACTION_ADDED "TP_A_ADD"
public static final java.lang.String ACTION_REMOVED "TP_A_RM"
public static final java.lang.String ACTION_SELECTION_CHANGED "TP_A_SC"
public static final int COLLAPSE 8
public static final java.lang.String KEY_PARENT_CTP "CTP$$P"
public static final java.lang.String KEY_SORT "CTB$$S"
public static final java.lang.String KEY_UNIQUE_ID "CTP$$U"
public static final int LEFT 2
public static final int RIGHT 4

charite.christo.ChTar
public static final java.lang.String EXTRACT "E"

charite.christo.ChTextComponents
public static final java.lang.String ACTION_INSERTED_TEXT_LONGER_ONE "CTCs$$I"
public static final int COMPL_ALLOW_SPC_IN_FILE 16
public static final java.lang.String COMPL_HYPERREFS "CTC$$WCHR"
public static final int COMPL_IC 4
public static final int COMPL_INFER_CASE 8
public static final int COMPL_TAB 2
public static final java.lang.String DIR_SAVED_TEXT "~/@/savedText/"
public static final long FRAME_OPTS 17179901958L
public static final long INSERT_IF_NOT_CONTAINS 1L
public static final java.lang.String KOPT_CLASS_AT_CURSOR "CTCs$$_2"
public static final java.lang.String KOPT_F1_HELP "CTC$$f1"
public static final java.lang.String RANGE_SUFX_XML "_VIEW_XML_"
public static final java.lang.String TT "CTC$$TT"

charite.christo.ChTextView
public static final java.lang.String KOPT_SEARCH_SKIP_BLANKS "KB$$B"

charite.christo.ChThread
public static final long WEAK_REFERENCE 2L

charite.christo.ChTransferable
public static final int FILE 1
public static final java.lang.String KOPT_RENDERER_TEXT "CT$$KRT"
public static final int OBJECT 2

charite.christo.ChTreeModel
public static final int DISPATCH_CHANGED 2
public static final int DISPATCH_INSERTED 1
public static final long SKIP_ROOT 2L

charite.christo.ChUtils
public static final int ACTGUN 12
public static final java.lang.String ACTION_BECOME_INVISIBLE "CU$$ABI"
public static final int ADD_MOLI_CHILDS 80000000
public static final int ANTS_PROTECT_ALIG 1
public static final int ANTS_SEARCH 0
public static final int BG_SELECTED 255
public static final int BUT_LAF 27
public static final int BUT_LOG 28
public static final int BUT_PREV_MSG 30
public static final int BUT_TEST_PROXY 25
public static final int CHANGED_CHILDS_OF_PROTEIN 1
public static final int CHANGED_COMBOBOX 5
public static final int CHANGED_PLUGINS_ADDED_OR_REMOVED 7
public static final int CHANGED_PROTEIN_AT_CURSOR 4
public static final int CHANGED_PROTEIN_LABEL 2
public static final int CHANGED_PROTEIN_ORDER 3
public static final int CHANGED_SELECTED_OBJECTS 6
public static final java.lang.String CNSEW "CNSEW"
public static final int COMPARE_ALPHABET 1
public static final int COMPARE_ALPHABET_IC 2
public static final int COMPARE_ID 6
public static final int COMPARE_NAME 5
public static final int COMPARE_RENDERER_TEXT 10
public static final int COMPARE_REVERT 7
public static final int COMPARE_SIZE 4
public static final int COMPARE_WHEN_CREATED 8
public static final int COMPARE_WHEN_MODIFIED 9
public static final int DIGT 3
public static final int DIGT_DASH 27
public static final int DIGT_DOT 36
public static final int DIGT_SPC 28
public static final int DO_NOTHING_ChRunnable 99
public static final int DRAW_MSG_SET_COLOR 1
public static final int EOL 31
public static final int FG_SELECTED 16777215
public static final long FILE_NEW_INSTANCE 2L
public static final long FILE_NO_ERROR 4L
public static final int FILENM 11
public static final int FILEP 34
public static final int FILTER_BACKSPACE 16384
public static final int FILTER_FIRST_OPTION 256
public static final int FILTER_FOLD 65536
public static final int FILTER_HTML_DECODE 4096
public static final int FILTER_HTML_ENCODE 8192
public static final int FILTER_NO_HTML_BODY 262144
public static final int FILTER_NO_MATCH_TO 256
public static final int FILTER_QUOTE_TO_HTML 524288
public static final int FILTER_TO_LOWER 1024
public static final int FILTER_TO_UPPER 512
public static final int FILTER_TRIM 131072
public static final int FILTER_UNIX_TO_DOS 2048
public static final int FILTER_URL_ENCODE 32768
public static final java.lang.String FLOWLEFT "CU$$FL"
public static final java.lang.String FLOWRIGHT "CU$$FR"
public static final int FOLI_FOCUS 35
public static final java.lang.String HB "hB"
public static final java.lang.String HBL "HBL"
public static final int HEX_DIGT 32
public static final long IDX_OF_INST_NOT 2L
public static final int IS_86 23
public static final int IS_DEBIAN 29
public static final int IS_KNOW_PACKAGE_MANAGER 28
public static final int IS_LINUX 21
public static final int IS_LINUX386 24
public static final int IS_MAC 22
public static final int IS_OPENJDK 27
public static final int IS_SUSE 30
public static final int IS_UNIX_SHELL 34
public static final int IS_USE_INSTALLED_SOFTWARE 33
public static final int IS_WEBSTARTED 26
public static final int IS_WINDOWS 20
public static final int IS_WINDOWS_95_FAMILY 25
public static final int JAVADIR_HOTSWAP 3
public static final int JAVADIR_JARS 1
public static final int JAVADIR_MAX 4
public static final int JAVADIR_PLUGINS 2
public static final int JAVADIR_RELOADABLE 4
public static final java.lang.String KEY_BEFORE_MENU_ITEM "PVU$$BI"
public static final java.lang.String KEY_DND_NOT_ITSELF "CU$$DND_NI"
public static final java.lang.String KEY_DND_OBJ "CC$$KDO"
public static final java.lang.String KEY_DRAG "CUs$$_26"
public static final java.lang.String KEY_JUST_WRITING_PNG "CUs$$_27"
public static final java.lang.String KEY_REQUEST_IMAGE_MAX_WIDTH "CU$$RIMW"
public static final java.lang.String KEY_REQUEST_IMAGE_OPTIONS "CU$$RIO"
public static final java.lang.String KEY_UNDOCK_TARGET "CU$11"
public static final int KLI_ALWAYS_ON_TOP 45
public static final int KLI_SHIFT_TIP 44
public static final java.lang.String KOPT_POPUP_MENU "CU$$RM"
public static final int LETTR 4
public static final int LETTR_DASH 24
public static final int LETTR_DASH_TILDE_DOT 29
public static final int LETTR_DIGT 7
public static final int LETTR_DIGT_DOT 45
public static final int LETTR_DIGT_US 10
public static final int LETTR_DIGT_US_COLON 30
public static final int LETTR_DIGT_US_DASH 38
public static final int LETTR_DIGT_US_DOT 43
public static final int LETTR_DIGT_US_DOT_SLASH 44
public static final int LIKE_DRIVE_LETTER 12
public static final int LIKE_EC 1
public static final int LIKE_ENSGhm 4
public static final int LIKE_EXTURL 2
public static final int LIKE_FILEPATH 6
public static final int LIKE_FILEPATH_EVALVAR 7
public static final int LIKE_GB_NUCLEOTIDE_ID 16
public static final int LIKE_GB_PROTEIN_ID 15
public static final int LIKE_HTML 13
public static final int LIKE_KEGG 8
public static final int LIKE_KEGGc 9
public static final int LIKE_KEGGr 10
public static final int LIKE_MAILADDR 3
public static final int LIKE_NUM 11
public static final int LIKE_UNIPROT_ID 14
public static final int LOWR 6
public static final int LOWR_DIGT 9
public static final int MAP_ALLOW_EMPTY_STRING 524288
public static final int MAP_KEYS_LETTR_DIGT_LC 1048576
public static final int MAP_RM_TERMINAL_QUOTES 262144
public static final int MAP_VALUES_AS_CHARSEQUENCE 65536
public static final int MAP_VALUES_AS_INTERN 131072
public static final int MAXCHARCLASS 52
public static final int MENU_HAS_ACCELERATOR 2
public static final int MENU_NO_ICON 1
public static final int MENUITMS_EXEC 2
public static final int MENUITMS_LOG 1
public static final int MENUITMS_SECURITY 3
public static final int MENUITMS_WEB 4
public static final int MI_HEADLINE 2
public static final int MI_LONG 4
public static final int MOLI_LEFT_TO_MIDDLE 31
public static final int MOLI_REFRESH_TIP 32
public static final int MOLI_REPAINT_ON_ENTER_AND_EXIT 33
public static final int MOLI_TAB 38
public static final int NEW_BUT_EXEC_TRUSTED 21
public static final int PARA_INTRPRT 1
public static final int PARA_RDIRCT 2
public static final java.lang.String PROP_NMR_ONLY_FIRST_MODEL "NMR_ONLY_FIRST_MODEL"
public static final java.lang.String PROPERTY_FILE "~/@/myProperties.txt"
public static final java.lang.String REMAINING_VSPC1 "CU$$RVS1"
public static final java.lang.String REMAINING_VSPC2 "CU$$RVS2"
public static final long REQUEST_IMAGE_PACK 2L
public static final java.lang.String REQUEST_IMAGE_PFX_APP_ICN "CU$$RIPAI"
public static final long REQUEST_IMAGE_REMOVE_BORDER 8L
public static final long REQUEST_IMAGE_REMOVE_TEXT 4L
public static final long RFLCT_ASSERT_EXISTS 1L
public static final long RFLCT_PRINT_EXCEPTIONS 2L
public static final long RFLCT_RETURN_ERROR 8L
public static final long RFLCT_SET_ACCESSIBLE 16L
public static final long RFLCT_VERBOSE 4L
public static final int RM_CHARS_KEEP_ONE 16777216
public static final int SCRLLPN_CLR_BUT 96
public static final int SCRLLPN_EBORDER 2
public static final int SCRLLPN_INHERIT_SIZE 4
public static final int SCRLLPN_NO_REPAINT 128
public static final int SCRLLPN_NO_TOOLS 16
public static final int SCRLLPN_ORIG_SB 8
public static final int SCRLLPN_TOOLS 32
public static final int SLASH 26
public static final int SPC 2
public static final int SPC_PIPE 13
public static final long SPLIT_ALLOW_EMPTY_TOKENS 1L
public static final long SPLIT_SKIP_WHITE_SPC 8L
public static final long SPLIT_TRIM 6L
public static final long SPLIT_TRIM_L 2L
public static final long SPLIT_TRIM_R 4L
public static final long STRCHR_NOT 4398046511104L
public static final long STREAM_UNZIP 2L
public static final long STRPLC_16BIT 16384L
public static final long STRPLC_CACHED_SB 8192L
public static final long STRPLC_FILL_RIGHT 256L
public static final long STRPLC_FILL_RM 1024L
public static final long STRSTR_AFTER 2147483648L
public static final long STRSTR_ANY_SLASH 1099511627776L
public static final long STRSTR_BEGIN 8589934592L
public static final long STRSTR_BEGIN_OF_LINE 1048576L
public static final long STRSTR_E 1073741824L
public static final long STRSTR_END 17179869184L
public static final long STRSTR_EOL 2097152L
public static final long STRSTR_IC 2199023255552L
public static final long STRSTR_PREV 4294967296L
public static final long STRSTR_w 12582912L
public static final long STRSTR_w_L 4194304L
public static final long STRSTR_w_R 8388608L
public static final int SYSP_BIN_JAVA 13
public static final int SYSP_ICON_FILE_BROWSER 11
public static final int SYSP_JAVA_CLASS_PATH 6
public static final int SYSP_JAVA_HOME 5
public static final int SYSP_JAVA_VERSION 4
public static final int SYSP_NAME_FILE_BROWSER 12
public static final int SYSP_OS_ARCH 1
public static final int SYSP_OS_NAME 2
public static final int SYSP_OS_VERSION 3
public static final int SYSP_PATH_SEP 10
public static final int SYSP_SYS_LAF 14
public static final int SYSP_USER_DIR 9
public static final int SYSP_USER_HOME 8
public static final int SYSP_USER_NAME 7
public static final int TAB_COMPL_DELIMl 51
public static final int TAB_COMPL_DELIMr 50
public static final int TOCONTAINR_REVAL 1
public static final int TOG_ANTIALIASING 2
public static final int TOG_ASK_EXEC 15
public static final int TOG_CACHE 3
public static final int TOG_COLLAPSE 8
public static final int TOG_COMBINE_SEQ_FEATURES 19
public static final int TOG_CTRL_WHEEL 14
public static final int TOG_DESKTOP_UTILS 5
public static final int TOG_EDTFTP 16
public static final int TOG_JAVA_SRC 18
public static final int TOG_LOCK_JMENU 13
public static final int TOG_MENUICONS 4
public static final int TOG_NASK_DOWNLOAD 12
public static final int TOG_NASK_UPLOAD 9
public static final int TOG_SOUND 20
public static final int TOG_WARN_INST 17
public static final int TOG_WHITE_BG 1
public static final java.lang.String TTContextAndDnD "Right-click for context menu. Mouse drag for copying files."
public static final int UPDATE_DO_REPAINT 65536
public static final int UPDATE_DO_UPDATE_ENABLED 524288
public static final int UPDATE_DO_UPDATE_LISTS 131072
public static final int UPDATE_DO_UPDATE_TREES 262144
public static final int UPPR 5
public static final int UPPR_DIGT 8
public static final int UPPR_DIGT_COLON 40
public static final int UPPR_DIGT_US 41
public static final int URLENCOD 42
public static final java.lang.String USER_DOT_HOME "user.home"
public static final java.lang.String VB "vB"
public static final java.lang.String VBHB "vBhB"
public static final java.lang.String VBPNL "VBPNL"
public static final java.lang.String VISIT_URL_JAVAWS "&USEJAVAWS"
public static final int WORD_DELIM_L 21
public static final int WORD_DELIM_R 22

charite.christo.ChZip
public static final long PACK_IF_NEWER 2L

charite.christo.Customize
public static final int C_compiler 11
public static final int CLASS_Example 10001
public static final int CLASS_ExecPath 10002
public static final int CLASS_InitCommands 10003
public static final int CLASS_LateCommands 10004
public static final int CLASSPATH 1012
public static final int CplusPlus_compiler 12
public static final int cssAlignBrowser 49
public static final int databases 2
public static final int dviPsConverter 14
public static final int dviViewer 15
public static final int ecClassLinks 42
public static final int error 33
public static final int execAminoSeq 40
public static final int execResidueSelection 41
public static final int EXECUTABLE 1001
public static final int EXECUTABLES 1002
public static final int FILE 1007
public static final int fileBrowsers 16
public static final int FILES 1008
public static final int FLAG_INTERN 262144
public static final int FLAG_NOTIFY_IMMEDIATELY 1048576
public static final int FLAG_REPLACE 524288
public static final int FLAG_SKIP_COMMENTS 131072
public static final int fortran_compiler 18
public static final int htmlEditors 19
public static final int javaSourceEditor 20
public static final int keggOrganisms 47
public static final int laf 21
public static final int latex 37
public static final int LATEX 1003
public static final int latexEditors 13
public static final int LIST 1005
public static final int LIST_OF_CLASSES 1006
public static final int LIST_OF_DIRECTORIES 1010
public static final int MAP_TO_1_FROM_N 1013
public static final int MAX_ID 53
public static final int MAX_VARIABLE 1111
public static final int openFileWith 38
public static final int pdbLinks 44
public static final int pdbSite 34
public static final int pdflatex 35
public static final int pdfViewer 22
public static final int proteinDatabases 4
public static final int proteinFileExtensions 23
public static final int psPoster 24
public static final int psViewer 25
public static final int refuseExe 52
public static final int scriptByRegex 39
public static final int seqFeatureColors 50
public static final int SHELL_SCRIPT 1011
public static final int speciesIcons 48
public static final int testProxySelector 46
public static final int TEXT_LINES 1009
public static final int textEditors 27
public static final int trustExe 51
public static final int uniprotLinks 45
public static final int URL 1014
public static final int watchLogFile 28
public static final int webBrowser 29
public static final int webLinks 1
public static final int webSearches 43

charite.christo.DialogStringMatch
public static final java.lang.String ACTION_BEFORE "DSM$$B"
public static final java.lang.String ACTION_FINISHED "DSM$$F"
public static final int FROM_RENDERER_COMPONENT 4
public static final java.lang.String KEY_OPTIONS "DSM$$O"
public static final java.lang.String KEY_SAVE "DSM$$S"
public static final int NEVER_FILE_CONTENT 1
public static final java.lang.String PROVIDE_HAYSTACK "DSM$$PH"
public static final java.lang.String PROVIDE_STRINGS "DSM$$PS"

charite.christo.FilePopup
public static final long NO_RENAME 2L
public static final long PROTEIN_FILE 4L

charite.christo.HasPanel
public static final int NEW_PANEL 1
public static final int NO_NEW_PANEL 2

charite.christo.HasPrgParas
public static final long FURTHER_PARAMETERS 1L

charite.christo.HasRenderer
public static final int JLIST 2
public static final long STRIKE_THROUGH 1L

charite.christo.HelpCommands
public static final int ALL 255
public static final int DEFINITION 0
public static final int EXAMPLE 1
public static final int HINT 2
public static final int HTML 1024

charite.christo.HtmlDoc
public static final java.lang.String ACTION_OPEN_DIALOG "http://OPEN_DIALOG"
public static final java.lang.String ACTION_OPEN_TUTORIAL "http://OPEN_TUTORIAL_"
public static final java.lang.String ACTION_VIEW_SOURCE "http://VIEW_SOURCE"
public static final java.lang.String ID_BUTTON_FOR_CLASS "ID_BUTTON_FOR_CLASS"
public static final java.lang.String ID_LAST_COMPONENT "ID_LAST_COMPONENT"

charite.christo.HtmlUtil
public static final int B 32
public static final int I 64
public static final int S 4
public static final int U 16

charite.christo.Hyperrefs
public static final java.lang.String PAIR_ALIGNMENT "PAIR_ALIGNMENT:"
public static final int PLAIN_TEXT 2
public static final int PROTEIN_FILE 4
public static final int WEB_LINK 1

charite.christo.Insecure
public static final boolean ARBITRARY_WORKING_DIRECTORY_ALLOWED true
public static final boolean CLASSLOADING_ALLOWED true
public static final boolean EXEC_ALLOWED true
public static final java.lang.String TEXMF_DOT_CONF "/usr/share/texmf/web2c/texmf.cnf"
public static final boolean UNCONTROLLED_FILE_MODIFICATION_ALLOWED true

charite.christo.LAFChooser
public static final java.lang.String IF_NOT_ALREADY "LC$$INA"
public static final boolean METAL false

charite.christo.Microsoft
public static final java.lang.String CYGWIN_CORE "gcc-g++ gcc-g77 make python grep coreutils wget findutils "
public static final java.lang.String CYGWIN_LATEX "tetex tetex-extra gv "

charite.christo.RendererNumberAsOval
public static final int STYLE_COLORED_OVAL 0
public static final int STYLE_NUMBER 2
public static final int STYLE_OVAL 1

charite.christo.Sil
public static final java.lang.String ACTION "SilNewAct"

charite.christo.Strings2Tree
public static final int LEAFS_CONTAIN_ENTIRE_PATH 4
public static final int SKIP_LINES_WITH_HASH 1

charite.christo.TabItemTipIcon
public static final int FIELDS 5
public static final int HOME 4
public static final int ICON 3
public static final int ITEM 1
public static final int TAB 0
public static final int TIP 2

charite.christo.UniqueList<T>
public static final int ASSERT_EDT 8
public static final int HOOK_ACCESS 1
public static final int HOOK_CHANGE 0
public static final int TO_STRING_SUPER 16
public static final int UNIQUE 2
public static final int USE_HASH_SET 4

charite.christo.Web
public static final long SHOW_EXCEPTION 2L

charite.christo.blast.AbstractBlaster
public static final int BUT_IN_BROWSER 5
public static final int BUT_TXT 3
public static final int BUT_TXTe 4
public static final int BUT_XML 1
public static final int BUT_XMLb 2

charite.christo.blast.BlastParser
public static final int URL_EBI 1

charite.christo.blast.BlastResult
public static final long WRITE_MARK_NOVEL 2L

charite.christo.blast.SequenceBlaster
public static final int DATABASES_FULL_LIST 2
public static final int DATABASES_NUCLEOTIDES 1

charite.christo.protein.BasicResidueSelection
public static final int OFFSET_IS_1ST_IDX 2

charite.christo.protein.Bl2seq
public static final long ALIGNMENT 128L
public static final java.lang.String BLASTN "blastn"
public static final java.lang.String blastp "blastp"
public static final java.lang.String BLASTX "blastx"
public static final long OUTPUT_LONG 16L
public static final long OUTPUT_SHORT 8L
public static final long TRANS_3 1024L

charite.christo.protein.Blosum
public static final byte BLOSUM62_MAX 9
public static final byte BLOSUM62_MIN -4

charite.christo.protein.ChAlignUtils
public static final long PRINT_ALI_IDENT_LETTER 2L
public static final long PRINT_ALI_TRUNCATE 4L

charite.christo.protein.ChSoapEBI
public static final long ASK_FOR_PERMISSION 2L
public static final int STATUS_FINISHED 2
public static final int STATUS_RUNNING 1
public static final java.lang.String TYPE_OUT "out"

charite.christo.protein.DAS
public static final java.lang.String CAPABILITY_TYPE_feature "das1:features"
public static final int DAYS_VALID 2
public static final java.lang.String RUN_EXAMPLE_LOADED "DAS$$EL"
public static final java.lang.String UniProt "UniProt"
public static final java.lang.String URL_REGISTRY "http://www.dasregistry.org/das1/sources/"

charite.christo.protein.FetchSeqs
public static final java.lang.String CMD_WSDBFETCH_ERROR "CMD_WSDBFETCH_ERROR"
public static final java.lang.String CMD_WSDBFETCH_SEND_QUERY "CMD_WSDBFETCH_SEND_QUERY"
public static final java.lang.String CMD_WSDBFETCH_SUCCESS "CMD_WSDBFETCH_SUCCESS"
public static final java.lang.String DB_EMBL "EMBL"
public static final java.lang.String DB_NCBI_AA "NCBI_AA"
public static final java.lang.String DB_UNIPARC "UNIPARC"
public static final java.lang.String DB_UNIPROT "UNIPROT"
public static final java.lang.String NCBI_NT "NCBI_NT"
public static final long SKIP_EXISTING 1L

charite.christo.protein.FindUniprotID
public static final long COMPUTE_IF_NO_UNIPROT_ID 4L
public static final long FAST_METHODS 32L
public static final long FETCH_AFTER 8L
public static final long IF_UNIPROT_UNKNOWN 16L

charite.christo.protein.HeteroCompound
public static final long ONLY_PHOSPHATE 1L

charite.christo.protein.Matrix3D
public static final int FORMAT_EXPLAIN 4
public static final int FORMAT_JMOL 2
public static final int FORMAT_PLAIN 1
public static final int FORMAT_PYMOL 3
public static final int FORMAT_ROUNDED 5

charite.christo.protein.MultipleSequenceParser
public static final int CLUSTALW 7
public static final int FASTA 5
public static final int HSSP 4
public static final int MSF 1
public static final int NEXUS 6
public static final int PIR 8
public static final int PRODOM 3
public static final int SIMPLE 9
public static final int STOCKHOLM 2

charite.christo.protein.PDB_Parser
public static final int ATO 12
public static final int ATOM 1297044545
public static final int CHAIN_ID 21
public static final int COMP 1347243843
public static final int CONE 1162760003
public static final int ENDM 1296322117
public static final int HEAD 1145128264
public static final int HELI 1229735240
public static final int HETA 1096041800
public static final int MODR 1380208461
public static final int REMA 1095583058
public static final int SHEE 1162168403
public static final int SOUR 1381322579
public static final int TER 542262612
public static final int TITL 1280592212

charite.christo.protein.Picr_EBI
public static final int UNIPROT 1

charite.christo.protein.PredictSubcellularLocation
public static final int CENTRIOLE 113
public static final int CYTOSKELETON 112
public static final int CYTOSOL 102
public static final int ER 104
public static final int GOLGI 110
public static final int HUMAN 0
public static final int LYSOSOME 109
public static final int MAX_VARIABLE 115
public static final int MEMBRANE 108
public static final int MICROSOME 105
public static final int MITO_MATRIX 103
public static final int NUCLEUS 106
public static final int PEROXISOME 107
public static final int SECRETED 114
public static final int SYNAPSE 111
public static final int UNKNOWN 101

charite.christo.protein.Protein
public static final boolean AMINO_ACIDS true
public static final int B_INTO_SAME_LINE 5
public static final int B_PROCESSED 4
public static final int B_REGISTERD 6
public static final int CDS_GENE 0
public static final int CDS_NOTE 3
public static final int CDS_PRODUCT 1
public static final int CDS_PROTEIN 2
public static final int CDS_TRANSCRIPT_ID 5
public static final int CDS_TRANSLATION 6
public static final int CDS_XREFS 4
public static final int COMPLEMENT 2
public static final int FILE_TYPE_MAX 13
public static final int FORWARD 0
public static final long HETERO_ADD_APPLY_INVERSE_MX 2L
public static final long HETERO_ADD_UNIQUE 1L
public static final int m1stIdx 1
public static final int mANNO 2
public static final int mANNOsf 3
public static final int mASSOCPDB 4
public static final int MAX_CACHE 77
public static final int mDNA 5
public static final int mGAPS 6
public static final int mICON 7
public static final int mTIPS 8
public static final int mTRANS 9
public static final int NO_TRANSLATE -1
public static final boolean NUCLEOTIDES false
public static final int O_WEB_TOK 0
public static final int O_WEB_TOK1 2
public static final int O_WEB_TOKENS 1
public static final long PAINT_CHAIN_UNDERLINE 2L
public static final int POS_CLICKED_3D 1
public static final int POS_PRINT_COLUMN 2
public static final int REVERSE 1
public static final int REVERSE_COMPLEMENT 3

charite.christo.protein.Protein3d
public static final java.lang.String ID_DISPOSED "P3D$$3"
public static final java.lang.String ID_PROTEIN_VIEWER "P3D$$5"
public static final java.lang.String KEY_BIO_MOLECULES "P3$$M"
public static final java.lang.String KEY_INITIALLY_SHOW "P3$$IS"
public static final java.lang.String KEY_INTERPRET_AFTER_LOADING "P3$$IAL"
public static final java.lang.String KEY_MSG_NO_PROTEIN "P3D$$KMNP"
public static final java.lang.String SPIN "P3D$$spin"

charite.christo.protein.Protein3dUtils
public static final int ASTEX 4
public static final int GENERIC 0
public static final int JMOL 2
public static final int JV 6
public static final java.lang.String KEY_ADD_TO_NATIVE_MENU "P3U$$ATNM"
public static final java.lang.String LOG_FILE "strapOut/commands.3d.txt"
public static final java.lang.String LOG_PROTEIN_PFX "select_3D *, "
public static final int PYMOL 3
public static final int RASMOL 5
public static final java.lang.String SCRIPT_select_3D "select_3D "
public static final int SURFACE_ID 1
public static final int SURFACE_ID_COLON 131072
public static final int SURFACE_ID_DASH 262144
public static final int SURFACE_ID_DOT 1048576
public static final int SURFACE_ID_KOMMA 524288
public static final java.lang.String VARIABLES "$FIRST $LAST $NTERM $CTERM $ALL $AMINOACID "

charite.christo.protein.ProteinAlignment
public static final int DRAG_ALL_CHAINS 2
public static final int DRAG_MSA 1
public static final int DRAG_ORIG 4
public static final java.lang.String RUN_ADD_LISTENERS "PA$$AL"
public static final java.lang.String RUN_GET_DRAG_OPTIONS "PA$$GDO"
public static final java.lang.String RUN_NEW_DROP_TARGET "PA$$NDT"

charite.christo.protein.ProteinLabel
public static final long ALWAYS_CONTEXT_MENU 4L
public static final long VERTICAL 2L

charite.christo.protein.ProteinMC
public static final int MC_1ST_RES_IDX 4
public static final int MC_ATOM_COORD 23
public static final int MC_ATOM_COORD_ORIG 20
public static final int MC_CALPHA 22
public static final int MC_CALPHA_ORIG 19
public static final int MC_CDS 33
public static final int MC_CHARACTER_SEQUENCE 2
public static final int MC_CODING 31
public static final int MC_CURSOR_PROTEIN 7
public static final int MC_FILE_CONTENT 1
public static final int MC_FWD_OR_RC 35
public static final int MC_GAPPED_SEQUENCE 13
public static final int MC_HETERO_COMPOUNDS_V 50
public static final int MC_INFERRED_PDB 26
public static final int MC_MATRIX3D 21
public static final int MC_MAX 53
public static final int MC_NUC_IDX2TRANSLATED_IDX 34
public static final int MC_NUCLEOTIDE_STRAND 32
public static final int MC_NUCLEOTIDES 30
public static final int MC_PROTEIN_LABELS 8
public static final int MC_PROTEIN_USER_OBJECTS_V 51
public static final int MC_PROTEIN_VIEWERS_V 52
public static final int MC_RESIDUE_ANNOTATION_GROUPS 46
public static final int MC_RESIDUE_ANNOTATIONS_V 41
public static final int MC_RESIDUE_SECSTRU 18
public static final int MC_RESIDUE_SELECTION_LABELS 47
public static final int MC_RESIDUE_SELECTION_REFERENCE 43
public static final int MC_RESIDUE_SELECTIONS 42
public static final int MC_RESIDUE_SELECTIONS_V 40
public static final int MC_RESIDUE_TYPE 10
public static final int MC_RESIDUE_TYPE_FULL 11
public static final int MC_SELECTED_AA 44
public static final int MC_SOLVENT_ACCESSIBILITY 25
public static final int MC_SUBSET 3
public static final int MCA_ALIGNMENT 71
public static final int MCA_MAX 73
public static final int MCA_PROTEINS_V 70
public static final int MCA_SEQUENCE_FEATURES_V 72

charite.christo.protein.ProteinParser
public static final long IGNORE_SEQRES 1L
public static final long SEQUENCE_FEATURES 4L
public static final long SIDE_CHAIN_ATOMS 2L

charite.christo.protein.ProteinUtils
public static final int COMP_P_ALPHA 1
public static final int COMP_P_XYZ 2
public static final int COMP_SEL_VIS 3

charite.christo.protein.ProteinViewer
public static final java.lang.String COMMAND_HIDE_EVERYTHING "3d_hide_everything"
public static final java.lang.String COMMANDbackground "3D_background"
public static final java.lang.String COMMANDbiomolecule "3D_biomolecule"
public static final java.lang.String COMMANDcartoon "3D_cartoon"
public static final java.lang.String COMMANDcenter "3D_center"
public static final java.lang.String COMMANDcenter_amino "3D_center_amino"
public static final java.lang.String COMMANDchange_object_color "3D_change_object_color"
public static final java.lang.String COMMANDcolor "3D_color"
public static final java.lang.String COMMANDdots "3D_dots"
public static final java.lang.String COMMANDhighlight_selected_amino_acids "3D_highlight_selected_amino_acids"
public static final java.lang.String COMMANDhighlight_selected_atoms "3D_highlight_selected_atoms"
public static final java.lang.String COMMANDlabel "3D_label"
public static final java.lang.String COMMANDlabel_color "3D_label_color"
public static final java.lang.String COMMANDlines "3D_lines"
public static final java.lang.String COMMANDmesh "3D_mesh"
public static final java.lang.String COMMANDobject_delete "3D_object_delete"
public static final java.lang.String COMMANDribbons "3D_ribbons"
public static final java.lang.String COMMANDrotate "3D_rotate"
public static final java.lang.String COMMANDsa_surface "3D_sa_surface"
public static final java.lang.String COMMANDselect "3D_select"
public static final java.lang.String COMMANDselection_name "3D_selection_name"
public static final java.lang.String COMMANDset_rotation_translation "3D_set_rotation_translation"
public static final java.lang.String COMMANDshowScriptPanel "3D_script_panel"
public static final java.lang.String COMMANDspheres "3D_spheres"
public static final java.lang.String COMMANDsticks "3D_sticks"
public static final java.lang.String COMMANDsurface "3D_surface"
public static final java.lang.String COMMANDsurface_color "3D_surface_color"
public static final java.lang.String COMMANDzoom "3D_zoom"
public static final java.lang.String GET_ATOM_SELECTION_EXAMPLE "PV$$gASE"
public static final java.lang.String GET_AWTMASK_CONT_SELECTION "PV$$gMCS"
public static final java.lang.String GET_AWTMASK_DISC_SELECTION "PV$$gMDS"
public static final java.lang.String GET_CANVAS "PV$$gC"
public static final java.lang.String GET_FLAGS "PV$$gF"
public static final java.lang.String GET_FRAME_TITLE "PV$$gFT"
public static final java.lang.String GET_JMENUBAR "PV$$gJMB"
public static final java.lang.String GET_LAST_CREATED_OBJECT "PV$$gLCO"
public static final java.lang.String GET_SUPPORTED_COMMANDS "PV$$gSC"
public static final java.lang.String GET_SURFACEOBJECTS "PV$$gSO"
public static final long INTERPRET_NO_MSG_DIALOGS 2L
public static final java.lang.String PFX_SURFACE_OBJECT "surface_"
public static final long PROPERTY_EXTERNAL_PROCESS 8L
public static final long PROPERTY_HAS_CONTEXTMENU 4294967296L
public static final long PROPERTY_HAS_SCRIPT_PANEL 16777216L
public static final long PROPERTY_HEAVY_WEIGHT 32L
public static final long PROPERTY_MULTI_MOLECULE 1L
public static final long PROPERTY_MULTI_VIEW 4L
public static final long PROPERTY_NAMED_SELECTIONS 1073741824L
public static final long PROPERTY_NEEDS_UPDATE_SURFACES_WHEN_ROTATED 8589934592L
public static final long PROPERTY_OPENGL 64L
public static final long PROPERTY_RIBBON_COLOR_NO_CHANGE 2147483648L
public static final long PROPERTY_SEQUENCE_CURSOR_DELAYED 256L
public static final long PROPERTY_TK 16L
public static final java.lang.String PROTEIN "PROTEIN"
public static final java.lang.String RESIDUES "RESIDUES"
public static final java.lang.String SELECTION_CURSOR "Cursor"
public static final java.lang.String SELECTION_PICKED "picked"
public static final long SET_PROTEIN_VERBOSE 4L
public static final java.lang.String SET_RUN_AFTER_INSTALLATION "PV$$sRAI"

charite.christo.protein.ProteinWriter
public static final long ATOM_LINES 4L
public static final long CHAIN_A 4096L
public static final long CHAIN_B 8192L
public static final long CHAIN_SPACE 2048L
public static final long COMPLETE_PDB 725L
public static final long FASTA 2L
public static final long HELIX_SHEET 512L
public static final long HETEROS 64L
public static final long IDX_FOR_RESNUM 16384L
public static final long MET_INSTEAD_OF_MSE 1024L
public static final long NUCLEOTIDE_STRUCTURE 128L
public static final long NUCLEOTIDES 256L
public static final long PDB 1L
public static final long SEQRES 16L
public static final long SEQRES_IF_COORDINATES 32L
public static final long SIDE_CHAIN_ATOMS 8L

charite.christo.protein.Pymol
public static final java.lang.String DEFINE_THIS_COLOR "$DEFINE_THIS_COLOR"
public static final java.lang.String PYMOL_COLOR_NAME "$PYMOL_COLOR_NAME"

charite.christo.protein.ResidueSelection
public static final java.lang.String NAME_BACKBONE "Backbone"
public static final java.lang.String NAME_CURSOR "Cursor"
public static final java.lang.String NAME_MOUSE_OVER "mouse over"
public static final java.lang.String NAME_STANDARD "selected"

charite.christo.protein.SequenceAligner
public static final long OPTION_CHECK_PERFECT_MATCH 2L
public static final long OPTION_NOT_TO_SECURITY_LIST 4L
public static final long OPTION_USE_SECONDARY_STRUCTURE 1L
public static final long PROPERTY_LOCAL_ALIGNMENT 2L
public static final long PROPERTY_ONLY_TWO_SEQUENCES 4L
public static final float SCORE_FOR_PERFECT_MATCH 7777.0f

charite.christo.protein.StrapEvent
public static final int AA_SHADING_CHANGED 110
public static final int ALIGNMENT_CHANGED 65562
public static final int ALIGNMENT_SCROLLED 120
public static final int ATOM_COORDINATES_CHANGED 786455
public static final int BACKGROUND_CHANGED 111
public static final int BACKUP_WRITTEN 103
public static final int CHARACTER_SEQUENCE_CHANGED 196629
public static final int COMPUTATION_STARTED 121
public static final int CURSOR_CHANGED_PROTEIN 3
public static final int CURSOR_CLICKED 4
public static final int CURSOR_MOVED_WITHIN_PROTEIN 1
public static final int CURSOR_MOVED_WITHIN_PROTEIN_DELAYED 2
public static final int FLAG_ALIGNMENT_CHANGED 65536
public static final int FLAG_ATOM_COORDINATES_CHANGED 524288
public static final int FLAG_CHILDS_OF_PROTEINS_CHANGED 1048576
public static final int FLAG_RESIDUE_TYPES_CHANGED 131072
public static final int FLAG_ROW_HEADER_CHANGED 262144
public static final int FONT_CHANGED 112
public static final int HETERO_OR_NUCLEOTIDE_STRUCTURE_ADDED_OR_REMOVED 1048677
public static final int IMAGE_DOWNLOADED 123
public static final int LISTENER_ADDED 9
public static final int NEED_SCROLL_DOWN_ALIGNMENT 137
public static final int NUCL_TRANSLATION_CHANGED 196630
public static final int OBJECTS_SELECTED 13
public static final int ORDER_OF_PROTEINS_CHANGED 327710
public static final int PLUGIN_CHANGED 102
public static final int PROGRESS 124
public static final int PROTEIN_3D_MOVED 524312
public static final int PROTEIN_ICON_CHANGED 262156
public static final int PROTEIN_PROTEIN_DISTANCE_CHANGED 55
public static final int PROTEIN_RENAMED 262155
public static final int PROTEIN_SELECTED 14
public static final int PROTEIN_VIEWER_CLOSED 1048709
public static final int PROTEIN_VIEWER_LAUNCHED 1048708
public static final int PROTEIN_VIEWER_PICKED 134
public static final int PROTEIN_VIEWER_SURFACES_CHANGED 135
public static final int PROTEIN_XREF_CHANGED 136
public static final int PROTEINS_ADDED 327714
public static final int PROTEINS_HIDDEN 327711
public static final int PROTEINS_KILLED 327713
public static final int PROTEINS_SHOWN 327712
public static final int RESIDUE_SELECTION_ADDED 1048638
public static final int RESIDUE_SELECTION_CHANGED 61
public static final int RESIDUE_SELECTION_CHANGED_COLOR 1048636
public static final int RESIDUE_SELECTION_DELETED 1048639
public static final int RESIDUE_SELECTION_RENAMED 1048640
public static final int RESIDUE_SELECTION_SELECTED 15
public static final int RESIDUE_TYPES_CHANGED 196628
public static final int RUBBER_BAND_CREATED_OR_REMOVED 16
public static final int SCRIPT_LINE 150
public static final int VALUE_OF_ALIGN_POSITION_CHANGED 51
public static final int VALUE_OF_ALIGN_POSITION_CHANGED_COLOR 53
public static final int VALUE_OF_PROTEIN_CHANGED 54
public static final int VALUE_OF_RESIDUE_CHANGED 50
public static final int VALUE_OF_RESIDUE_CHANGED_COLOR 52
public static final int VIEWER3D_MOLECULE_LOADED 25

charite.christo.protein.Superimpose3D
public static final int COLUMN_SEQUENCE 10
public static final long PARSE_ALIGNMENT 1L
public static final long PARSE_MATRIX 2L
public static final long PARSE_MSA_START_S 8L
public static final long PARSE_SCORE 4L
public static final long PRINT_HUMAN_READABLE 1L

charite.christo.protein.VisibleIn123
public static final int ANYWHERE -1
public static final long ARROW_HEADS 1L
public static final int BIT_SHIFT_LINE 16
public static final int HTML 128
public static final int JALVIEW 256
public static final int NO_FLASH 8
public static final int SB 64
public static final int SEQUENCE 16
public static final int STRUCTURE 32
public static final int STYLE_BACKGROUND 0
public static final int STYLE_CIRCLE 3
public static final int STYLE_CURSOR 9
public static final int STYLE_DOTTED 4
public static final int STYLE_HIDDEN 7
public static final int STYLE_IMAGE 1
public static final int STYLE_IMAGE_LUCID 2
public static final int STYLE_LOWER_HALF_BACKGROUND 5
public static final int STYLE_UNDERLINE 8
public static final int STYLE_UPPER_HALF_BACKGROUND 6

charite.christo.strap.AbstractAligner
public static final java.lang.String MFA_FILE "input.fa"
public static final java.lang.String PFX_DPKG "\nPFX_DPKG "
public static final java.lang.String RPLC_WIN_DOT_EXE "AE$$RWDE"

charite.christo.strap.AbstractAlignmentProject
public static final int CHART_DATA 6
public static final int DEF 2
public static final java.lang.String DIR_PROTEINS "proteins/"
public static final int EC 4
public static final int FILES 0
public static final int NAME 5
public static final int NOTE 1
public static final int TITLE 3

charite.christo.strap.AlignmentWriter
public static final long CLUSTALW 4L
public static final long CSS_BROWSER 8388608L
public static final long EXTRA_SPACE 2048L
public static final long FASTA 8L
public static final long FILE_SUFFIX 1024L
public static final long HTML 1L
public static final long HTML_HEAD_BODY 16777216L
public static final long MSF 2L
public static final long NO_GAPS 8192L
public static final long NUCLEOTIDE_TRIPLET 4096L
public static final long PDB_RESIDUE_NUMBER 16384L
public static final long PROTEIN_ICONS 134217728L
public static final long SECONDARY_STRUCTURE 4194304L
public static final long UNDERLINE_ANNOTATIONS 2097152L

charite.christo.strap.DialogAlign
public static final java.lang.String RADIO_REGION "Rubber band selection"
public static final java.lang.String RADIO_SELECTION "Text list of protein names"

charite.christo.strap.DialogAlignResult
public static final java.lang.String BUT_LAB_Apply "Approve alignment"

charite.christo.strap.DialogDifferentResidues
public static final java.lang.String SWISS_VIEWER "SwissViewer"

charite.christo.strap.DialogDotPlot
public static final long BL2SEQ 2L
public static final long CB_HITS 4L
public static final java.lang.String CB_LAB_Trace "trace of the alignment"
public static final long NUCLEOTIDES 8L

charite.christo.strap.DialogPublishAlignment
public static final java.lang.String BUT_LAB_B "Test web page in Web Browser"
public static final java.lang.String BUT_LAB_F "\u2193\u2193\u2193 Generate Web Form \u2193\u2193\u2193"
public static final java.lang.String BUT_LAB_P "\u2193\u2193\u2193 Generate parameter String \u2193\u2193\u2193"
public static final java.lang.String BUT_LAB_U "\u2193\u2193\u2193 Form URL \u2193\u2193\u2193"

charite.christo.strap.DialogRenameProteins
public static final int COMPENSATE_GAPS 8
public static final int COPY 2
public static final int D_melanogaster_P40301 6
public static final int Drosophila_melanogaster_P40301 5
public static final int Fruit_fly_P40301 8
public static final int GENERATE 1
public static final int INFO_CUT_TERMINI 4
public static final int MAX_VARIABLE 9
public static final int P40301 1
public static final int P40301_D_melanogaster 7
public static final int P40301_DroMe 2
public static final int PRC3_DROME 3
public static final int PRC3_DROME_P40301 4

charite.christo.strap.DialogResidueAnnotationChanges
public static final java.lang.String BUT_LAB_Add "Add"
public static final java.lang.String BUT_LAB_Kill "Kill"
public static final java.lang.String BUT_LAB_Replace "Replace"

charite.christo.strap.DialogSimilarStructureResult
public static final java.lang.String KEY_SUGGESTION "DSSR$$S"
public static final long VIEW3D_ON_PRESSING_APPLY 1L

charite.christo.strap.DialogSuperimpose3D
public static final java.lang.String BUT_LAB_Apply "Approve"

charite.christo.strap.DrawGappedSequence
public static final int AA2NT 2
public static final int NUCLEOTIDES 4
public static final int SHADE_SEC_STRU 1

charite.christo.strap.ExpasyGff
public static final int F_NO_SEC_STRU 1
public static final int F_SEC_STRU 2

charite.christo.strap.Export2Jalview
public static final int SECSTRU 1

charite.christo.strap.FilesFetchedFromServer
public static final java.lang.String BUT_LAB_Load "Load selected proteins"

charite.christo.strap.HeteroPopup
public static final java.lang.String TITLE " Nucleotide and Hetero 3D-Structure"

charite.christo.strap.ProteinList
public static final long ACTGN 64L
public static final long CALPHA 2L
public static final long CHAINS 2048L
public static final long EC 8L
public static final long HETERO3D 67108864L
public static final long IN_3D 1024L
public static final long IN_ALI 16L
public static final long INFERRED_3D 268435456L
public static final long NO_3D_FILE 536870912L
public static final long NO_CALPHA 512L
public static final long NO_PDB_ID 1073741824L
public static final long NONE 33554432L
public static final long NOT_ACTGN 256L
public static final long NOT_IN_ALI 32L
public static final long NT 1L
public static final long NT_or_ACTGN 128L
public static final long NUC3D 134217728L
public static final long PDB_ID 4L
public static final long RES_ANNO 4194304L
public static final long RES_SEL 8388608L
public static final long SECSTRU 4096L
public static final long SEQ_FEATURE 16777216L
public static final long SOLVENT 2097152L

charite.christo.strap.ProteinPopup
public static final java.lang.String ACTION_backbone "^Protein backbone"
public static final java.lang.String ACTION_close3d "^Close protein in all external 3D-viewers such as Pymol"
public static final java.lang.String ACTION_showInList "^Display list"
public static final java.lang.String CMD_HL_DIFF "^Mark differing positions in the aligned selected proteins"

charite.christo.strap.ProteinViewerPopup
public static final long SESSION_LOAD_PROTS 2L
public static final long SESSION_NO_ASK 4L

charite.christo.strap.ResidueAnnotation
public static final java.lang.String ATOMS "Atoms"
public static final java.lang.String BALLOON "Balloon"
public static final java.lang.String BG_IMAGE "BG_IMAGE"
public static final java.lang.String COLOR "Color"
public static final java.lang.String DISABLED "Disabled"
public static final long ENTRY_NOT_SAVED 2L
public static final java.lang.String GROUP "Group"
public static final java.lang.String NAME "Name"
public static final java.lang.String POS "Positions"
public static final java.lang.String SPECIFIC_VIEW3D "Specific_3D_view"
public static final java.lang.String STYLE "Style"
public static final java.lang.String VIEW3D "3D_view"

charite.christo.strap.ResidueAnnotationView
public static final java.lang.String BUT_INS_VAR "Insert variable..."
public static final java.lang.String BUT_LAB_VARIABLES "View current replacement for variables such as \"TEX_PROTEIN\" or \"First_Aaa\""

charite.christo.strap.ResidueSelectionPopup
public static final java.lang.String ACTION_edit "View / ^edit annotations ..."
public static final java.lang.String ACTION_MK_RESANO "Annotate ..."
public static final int BUT_EXEC 6
public static final int WIKI_3D 7
public static final int WIKI_D 5

charite.christo.strap.ResSelUtils
public static final long CHOOSE_CONTEXT 4L
public static final long CHOOSE_EDIT 8L
public static final long CHOOSE_SINGLE 2L
public static final int COPY_ADD_TO_PROTEIN 2
public static final int COPY_ASK_NAME 8
public static final int COPY_REPORT 16
public static final int COPY_SINGLE 4

charite.christo.strap.SPUtils
public static final long ALIGN_CHANGE_ORDER 2L
public static final long INFER3D_HOMOLOGOUS 4L
public static final long INFER3D_IF_NOT_ALREADY 16L
public static final long INFER3D_SET_FILE 32L
public static final long INFER3D_SHOW_BACKBONE 8L
public static final long SUPERIMP_COMPLEX_BEST 4L
public static final long SUPERIMP_EVENT 2L

charite.christo.strap.StrapAlign
public static final java.lang.String ACTION_ignoreSEQRES "Ignore \"SEQRES\" lines in PDB-files"
public static final java.lang.String ACTION_newPan "New alignment panel"
public static final java.lang.String ACTION_openPlugin "Standard plugins ..."
public static final long ANIM_SET_CURS_SCROLL_TO_VISIBLE 4L
public static final int BUT_hiddenP 17
public static final int BUT_NEW_PANEL 15
public static final int BUT_NEW_STRAP 16
public static final int BUT_SAVE 12
public static final int BUT_SELECT_BY_NAME 13
public static final int BUT_STOP_ALL 11
public static final int BUT_UPDATEUI 14
public static final int BUT_ZIP 18
public static final java.lang.String CMD_ALL_MENUS "Menubar"
public static final java.lang.String CMD_ALL_POPUP "Context-menus"
public static final java.lang.String CMD_DEL_ICONS "Delete icons of selected proteins"
public static final java.lang.String CMD_PDB_ICONS "Load image icons from pdb-site"
public static final java.lang.String CMD_SPECIES_ICONS "Load species pictogramms"
public static final java.lang.String CMD_TABLE_ICONS "List protein icons"
public static final java.lang.String KOPT_DELETE_DISABLED "StAl$$5"
public static final java.lang.String LABEL_ALL_OR_SELECTED_P "A_or_SEL_pp"
public static final int OPTION_EVENT_PROTEINS_ADDED 2097152
public static final int OPTION_PROCESS_LOADED_PROTS 1048576
public static final int OPTION_SHOW_ORPHAN_HETEROS_IN_3D 4194304
public static final long SORT_ALL 8L
public static final long SORT_PREFORDER 16L
public static final long SORT_WEB 2L
public static final int TOG_HIDE_GAPS 4
public static final int TOG_HIGHLIGHT_IDENTICAL_SEQUENCES 2
public static final int TOG_IN_NEW_FRAME 5
public static final int TOG_MAXIMIZE_DIALOGS 1
public static final int TOG_MULTI_MBARS 8
public static final int TOG_OUTLINE_HSB 7
public static final int TOG_SKIP_IDENTICAL_SEQUENCE 3
public static final int TOG_TUTORIAL_SIMUL_MENUS 9
public static final java.lang.String VIEW_SB "SB"
public static final int WEB_OPTION_DOWNLOAD_ORIGINAL_PROTEINS 32768
public static final int WEB_OPTION_RENAME_SWISS 8192
public static final int WEB_OPTION_SCROLL 65536
public static final int WEB_OPTION_SEPARATE_PDB_CHAINS 2048
public static final int WEB_OPTION_SKIP_PDB_IF_ALREADY_LOADED 4096
public static final int WEB_OPTION_splitChains 131072
public static final int WEB_OPTION_USE_UNIPROT_SOAP 16384

charite.christo.strap.StrapDAS
public static final long STOP_ON_CLOSED_FRAME 2L

charite.christo.strap.StrapHotswap
public static final java.lang.String BUT_LAB_Apply "Apply or <br>start plugin"
public static final java.lang.String BUT_LAB_Edit "Edit/view<br> Java source"
public static final java.lang.String BUT_LAB_New "New <br>plugin"

charite.christo.strap.StrapScriptInterpreter
public static final java.lang.String ANY_VIEWER "$ANY_VIEWER"
public static final java.lang.String ANY_WIRE "$ANY_WIRE"
public static final java.lang.String PREFIX_rh "row_header_print_"
public static final java.lang.String SCRIPT_aa_sequence "aa_sequence "
public static final java.lang.String SCRIPT_accession_id "accession_id "
public static final java.lang.String SCRIPT_add_annotation "add_annotation "
public static final java.lang.String SCRIPT_add_xref "add_xref "
public static final java.lang.String SCRIPT_align "align "
public static final java.lang.String SCRIPT_ants "ants "
public static final java.lang.String SCRIPT_balloon_text "balloon_text "
public static final java.lang.String SCRIPT_below_row "below_row "
public static final java.lang.String SCRIPT_box "box "
public static final java.lang.String SCRIPT_cds "cds "
public static final java.lang.String SCRIPT_close "close "
public static final java.lang.String SCRIPT_close_3D "close_3D "
public static final java.lang.String SCRIPT_close_wire "close_wire "
public static final java.lang.String SCRIPT_cursor "cursor "
public static final java.lang.String SCRIPT_das "DAS_features "
public static final java.lang.String SCRIPT_define_complex "define_protein_complex "
public static final java.lang.String SCRIPT_deiconify "deiconify"
public static final java.lang.String SCRIPT_delete "delete "
public static final java.lang.String SCRIPT_download_files "download_protein_files "
public static final java.lang.String SCRIPT_exit "exit"
public static final java.lang.String SCRIPT_gaps "gaps "
public static final java.lang.String SCRIPT_gff_expasy "GFF_expasy_features "
public static final java.lang.String SCRIPT_hide "hide "
public static final java.lang.String SCRIPT_icon "icon "
public static final java.lang.String SCRIPT_iconify "iconify"
public static final java.lang.String SCRIPT_infer_xyz "project_coordinates "
public static final java.lang.String SCRIPT_jalview "jalview "
public static final java.lang.String SCRIPT_load "load "
public static final java.lang.String SCRIPT_msec "mseconds"
public static final java.lang.String SCRIPT_new_aminoacid_selection "new_selection "
public static final java.lang.String SCRIPT_new_nucleotide_selection "new_nucleotide_selection "
public static final java.lang.String SCRIPT_open_3D "open_3D "
public static final java.lang.String SCRIPT_plugin "plugin "
public static final java.lang.String SCRIPT_remove_xref "remove_xref "
public static final java.lang.String SCRIPT_rh_compound "row_header_print_compound "
public static final java.lang.String SCRIPT_rh_ec "row_header_print_enzyme_class "
public static final java.lang.String SCRIPT_rh_name "row_header_print_name "
public static final java.lang.String SCRIPT_rh_organism "row_header_print_organism "
public static final java.lang.String SCRIPT_rotate_translate "rotate_translate "
public static final java.lang.String SCRIPT_rotate_translate_complex "rotate_translate_protein_complex "
public static final java.lang.String SCRIPT_scroll_to "scroll_to "
public static final java.lang.String SCRIPT_search_uniprot "find_uniprot_id "
public static final java.lang.String SCRIPT_search_uniprot_fast "find_uniprot_id_fast "
public static final java.lang.String SCRIPT_secondary_structure "secondary_structure "
public static final java.lang.String SCRIPT_select "select "
public static final java.lang.String SCRIPT_select_3D "select_3D "
public static final java.lang.String SCRIPT_selection_to_3D "selection_to_3D "
public static final java.lang.String SCRIPT_seqvista "seqvista "
public static final java.lang.String SCRIPT_set_annotation "set_annotation "
public static final java.lang.String SCRIPT_sleep "sleep "
public static final java.lang.String SCRIPT_spice "spice "
public static final java.lang.String SCRIPT_src "source_code "
public static final java.lang.String SCRIPT_superimpose "superimpose "
public static final java.lang.String SCRIPT_superimpose_complex "superimpose_protein_complexes "
public static final java.lang.String SCRIPT_to_3D "to_3D "
public static final java.lang.String SCRIPT_to_front_3D "to_front_3D "
public static final java.lang.String SCRIPT_to_row "to_row "
public static final java.lang.String SCRIPT_to_structure_viewer "to_structure_viewer "
public static final java.lang.String SCRIPT_toFront "STRAP_to_front"
public static final java.lang.String SCRIPT_tree "tree "
public static final java.lang.String SCRIPT_unhide "unhide "
public static final java.lang.String SCRIPT_unselect "unselect "
public static final java.lang.String SCRIPT_use_3D_viewer "use_3D_viewer "
public static final java.lang.String SCRIPT_wait_for "wait_for "
public static final java.lang.String SCRIPT_wire "wire "

charite.christo.strap.StrapTree
public static final java.lang.String ACTION_SELECT "S"

charite.christo.strap.StrapView
public static final int BUT_3D 17
public static final int BUT_ALIGN 19
public static final int BUT_ALIGN_CTRL 20
public static final int BUT_ALIGN_UNDO 21
public static final int BUT_EXPORT 18
public static final int BUT_FEATURE 23
public static final int BUT_INFER3D_ALL 12
public static final int BUT_LAF 22
public static final int BUT_LIST_HET 13
public static final int BUT_NUCL 15
public static final int BUT_SEQVISTA 16
public static final int BUT_WARN_MARCHING_ANTS 24
public static final int CURSOR_COLUMN 2
public static final java.lang.String KEY_AP "SV$$AP"
public static final java.lang.String KEY_RH "SV$$RH"
public static final int MCSV_CHARACTERS 2
public static final int MCSV_FREQ 3
public static final int MCSV_RESSEL_RECT 1
public static final int TOG_BRIGHTER 33
public static final int TOG_MAXIMIZE 31
public static final int TOG_PLOT_ENTIRE_PANEL 35
public static final int TOG_PROTECT_COL 36
public static final int TOG_SHADE_ONLY_SELECTED 34

charite.christo.strap.Texshade
public static final java.lang.String AUX_FILE "strapTmp/texshade/alignm.aux"
public static final java.lang.String BUT_LAB_EditSource "edit tex"
public static final java.lang.String CB_LAB_Postscript "Generate PostScript instead of PDF"
public static final java.lang.String DIR "strapTmp/texshade/"
public static final java.lang.String DVI_FILE "strapTmp/texshade/alignm.dvi"
public static final java.lang.String EXAMPLES_RSC "TexshadeExamples.rsc"
public static final java.lang.String LOG_FILE "strapTmp/texshade/alignm.log"
public static final java.lang.String MSF_FILE "strapTmp/texshade/alignm.msf"
public static final java.lang.String PDF_COPY_FILE "strapTmp/texshade/align.pdf"
public static final java.lang.String PDF_FILE "strapTmp/texshade/alignm.pdf"
public static final java.lang.String PS_FILE "strapTmp/texshade/alignm.dvi.ps"
public static final java.lang.String PS_POSTER_FILE "strapTmp/texshade/poster.ps"
public static final java.lang.String SAVE "texshade/"
public static final java.lang.String TEX_FILE "strapTmp/texshade/alignm.tex"

charite.christo.strap.V3dListModel
public static final int ANNO 7
public static final int DELETED_OBJECTS 3
public static final int HET 5
public static final int NUCL 4
public static final int PROTEINS 1
public static final int SEL 6
public static final int SFEATURE 8
public static final int SURFACE_OBJECTS 2

charite.christo.strap.V3dUtils
public static final int OPEN_ADD_TAB 32
public static final int OPEN_ASK 2
public static final int OPEN_EACH_PROTEIN_OWN_COLOR 128
public static final int OPEN_INIT_SCRIPT 64
public static final int OPEN_NARROW_OTHERS 16
public static final int OPEN_NOT_ADD_PANEL 8
public static final int OPEN_SEND_ALL_ANNOTATIONS 4
public static final int OPEN_VERBOSE 1
public static final int PV_FOCUSED 0
public static final int PV_FOCUSED_NOT_MB 1000
public static final int PV_MENUBAR 1
public static final long RSto3D_AS_ONE_SINGLE 8L
public static final long RSto3D_ASK_NAME 32L
public static final long RSto3D_COLOR 4L
public static final long RSto3D_COMMANDS 2048L
public static final long RSto3D_GENERIC_NAME 512L
public static final long RSto3D_NO_WIRE 256L
public static final long RSto3D_NOT_SAME_WIRE 128L
public static final long RSto3D_REPORT_ERROR 64L
public static final long RSto3D_SAME_PROTEIN 16L
public static final long RSto3D_SET_FOCUSED_PV 2048L
public static final long RSto3D_SPECIFIC_ATOMS 1024L

charite.christo.strap.extensions.AlignmentEntropy
public static final int GAP_IS_21TH_AMINO_ACID 1
public static final int GAP_IS_A_DIFFERENT_AMINO_ACID 2
public static final int SKIP_GAPS 0

charite.christo.strap.extensions.PairAlignerNeoBioPROXY
public static final java.lang.String GLOBAL_CROCHEMORELANDAUZIVUKELSON "Global CrochemoreLandauZivUkelson"
public static final java.lang.String GLOBAL_NEEDLEMANWUNSCH "Global NeedlemanWunsch"
public static final java.lang.String LOCAL_CROCHEMORELANDAUZIVUKELSON "Local CrochemoreLandauZivUkelsony"
public static final java.lang.String LOCAL_SMITHWATERMAN "Local SmithWaterman"
public static final java.lang.String PARA_ALGORITHM "Algorithm"
public static final java.lang.String PARA_GAP "Gap"
public static final java.lang.String PARA_MATCH "Match"
public static final java.lang.String PARA_MISMATCH "Mismatch"

charite.christo.strap.extensions.Superimpose_CEPROXY
public static final int MIN_CALPHA 16

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'STRAP:multiple sequence alignments '
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'The most important classes are StrapAlign, Protein and StrapEvent.'