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java.lang.Object charite.christo.AbstractProxy charite.christo.strap.AbstractAlignerProxy charite.christo.strap.extensions.Superimpose_CEPROXY
public class Superimpose_CEPROXY
HELP CE/CL ported to Java by Andreas Prlic
Nested Class Summary |
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Nested classes/interfaces inherited from interface charite.christo.protein.Superimpose3D |
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Superimpose3D.Result |
Field Summary | |
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static int |
MIN_CALPHA
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Fields inherited from class charite.christo.AbstractProxy |
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ACTIVATION, ADAPTERS_JAR, BIOJAVA_3D, COMMONS_COLLECTIONS, GLUGEN, JCOMMON, JOGL, LOG4J, PFX_INSTALLED, TRY_BOOT_CLASSLOADER |
Fields inherited from interface charite.christo.protein.Superimpose3D |
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COLUMN_SEQUENCE, NO_BYTE, PARSE_ALIGNMENT, PARSE_MATRIX, PARSE_MSA_START_S, PARSE_SCORE, PRINT_HUMAN_READABLE |
Fields inherited from interface charite.christo.protein.SequenceAligner |
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OPTION_CHECK_PERFECT_MATCH, OPTION_NOT_TO_SECURITY_LIST, OPTION_USE_SECONDARY_STRUCTURE, PROPERTY_LOCAL_ALIGNMENT, PROPERTY_ONLY_TWO_SEQUENCES, SCORE_FOR_PERFECT_MATCH |
Constructor Summary | |
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Superimpose_CEPROXY()
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Method Summary | |
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long |
getPropertyFlags()
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java.lang.String |
getRequiredJars()
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Methods inherited from class charite.christo.strap.AbstractAlignerProxy |
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compute, getAlignedSequences, getOptions, getProteins, getResult, getSequences, setOptions, setProteins, setSequences |
Methods inherited from class charite.christo.AbstractProxy |
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dispose, disposeProxy, getControlPanel, getPrgParas, getPropertyMap, getProxy, getScore, getSharedControlPanel, getSharedInstance, interpret, jarFile, jarsContainingNativeLibraries, proxyObject, proxyObjectRun, remoteURLs, setOptions, setSharedInstance, usrShareJava |
Methods inherited from class java.lang.Object |
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equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Methods inherited from interface charite.christo.HasScore |
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getScore |
Methods inherited from interface charite.christo.protein.Superimpose3D |
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compute, getOptions, getProteins, getResult, setOptions |
Methods inherited from interface charite.christo.protein.SequenceAligner |
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compute, getAlignedSequences, getOptions, getSequences, setOptions, setSequences |
Methods inherited from interface charite.christo.protein.NeedsProteins |
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setProteins |
Field Detail |
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public static final int MIN_CALPHA
Constructor Detail |
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public Superimpose_CEPROXY()
Method Detail |
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public long getPropertyFlags()
getPropertyFlags
in interface SequenceAligner
public java.lang.String getRequiredJars()
getRequiredJars
in class AbstractProxy
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