'STRAP:multiple sequence alignments '

charite.christo
Class AbstractProxy

java.lang.Object
  extended by charite.christo.AbstractProxy
All Implemented Interfaces:
HasPropertyMap
Direct Known Subclasses:
AbstractAlignerProxy, AbstractProteinViewerProxy, AnonymousFTPPROXY, ChCompilerJavacPROXY, ChHttpClientPROXY, ChJOrthoPROXY, ChPdfUtilsPROXY, ChTarPROXY, FlavinePROXY

public abstract class AbstractProxy
extends java.lang.Object
implements HasPropertyMap


Field Summary
static short ACTIVATION
           
static java.lang.String ADAPTERS_JAR
           
static short BIOJAVA_3D
           
static short COMMONS_COLLECTIONS
           
static short GLUGEN
           
static short JCOMMON
           
static short JOGL
           
static short LOG4J
           
static java.lang.String PFX_INSTALLED
           
static int TRY_BOOT_CLASSLOADER
           
 
Constructor Summary
AbstractProxy()
           
 
Method Summary
 void dispose()
           
static void disposeProxy(java.lang.Object o)
           
 javax.swing.JComponent getControlPanel(boolean real)
           
 PrgParas getPrgParas()
           
 java.util.Map getPropertyMap(boolean create)
           
static
<T> T
getProxy(java.lang.Object o, java.lang.Class<T> clas)
           
abstract  java.lang.String getRequiredJars()
           
 float getScore()
           
 javax.swing.JComponent getSharedControlPanel()
           
 java.lang.Object getSharedInstance()
           
 void interpret(long options, java.lang.String c)
           
static java.lang.String jarFile(short id)
          In the method getRequiredJars() frequently used jar-libraries should be referred to by a constant.
 java.lang.String jarsContainingNativeLibraries()
           
 java.lang.Object proxyObject()
           
 java.lang.Object proxyObjectRun(java.lang.String id, java.lang.Object para)
           
 java.net.URL[] remoteURLs()
           
 void setOptions(int o)
           
 void setSharedInstance(java.lang.Object shared)
           
 java.lang.String[] usrShareJava()
           
 
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

PFX_INSTALLED

public static final java.lang.String PFX_INSTALLED
See Also:
Constant Field Values

ADAPTERS_JAR

public static final java.lang.String ADAPTERS_JAR
See Also:
Constant Field Values

TRY_BOOT_CLASSLOADER

public static final int TRY_BOOT_CLASSLOADER
See Also:
Constant Field Values

COMMONS_COLLECTIONS

public static final short COMMONS_COLLECTIONS
See Also:
Constant Field Values

JCOMMON

public static final short JCOMMON
See Also:
Constant Field Values

LOG4J

public static final short LOG4J
See Also:
Constant Field Values

ACTIVATION

public static final short ACTIVATION
See Also:
Constant Field Values

JOGL

public static final short JOGL
See Also:
Constant Field Values

GLUGEN

public static final short GLUGEN
See Also:
Constant Field Values

BIOJAVA_3D

public static final short BIOJAVA_3D
See Also:
Constant Field Values
Constructor Detail

AbstractProxy

public AbstractProxy()
Method Detail

setOptions

public void setOptions(int o)

getRequiredJars

public abstract java.lang.String getRequiredJars()

usrShareJava

public java.lang.String[] usrShareJava()

remoteURLs

public java.net.URL[] remoteURLs()

jarsContainingNativeLibraries

public java.lang.String jarsContainingNativeLibraries()

proxyObject

public java.lang.Object proxyObject()

proxyObjectRun

public java.lang.Object proxyObjectRun(java.lang.String id,
                                       java.lang.Object para)

getScore

public float getScore()

getControlPanel

public javax.swing.JComponent getControlPanel(boolean real)

getSharedControlPanel

public javax.swing.JComponent getSharedControlPanel()

setSharedInstance

public void setSharedInstance(java.lang.Object shared)

getSharedInstance

public java.lang.Object getSharedInstance()

getPrgParas

public PrgParas getPrgParas()

interpret

public void interpret(long options,
                      java.lang.String c)

dispose

public void dispose()

jarFile

public static java.lang.String jarFile(short id)
In the method getRequiredJars() frequently used jar-libraries should be referred to by a constant. For example jarFile(COMMONS_COLLECTIONS) returns "commons-collections-3.2.jar "


getProxy

public static <T> T getProxy(java.lang.Object o,
                             java.lang.Class<T> clas)

disposeProxy

public static void disposeProxy(java.lang.Object o)

getPropertyMap

public java.util.Map getPropertyMap(boolean create)
Specified by:
getPropertyMap in interface HasPropertyMap

'STRAP:multiple sequence alignments '

'The most important classes are StrapAlign, Protein and StrapEvent.'