charite.christo.strap
Class StrapScriptInterpreter

java.lang.Object
  charite.christo.strap.StrapScriptInterpreter

All Implemented Interfaces:

ChRunnable

public class StrapScriptInterpreter
extends java.lang.Object
implements ChRunnable

Field Summary

static java.lang.String	ANY_VIEWER
static java.lang.String	ANY_WIRE
static java.lang.String	PREFIX_rh
static java.lang.String	SCRIPT_aa_sequence
static java.lang.String	SCRIPT_accession_id
static java.lang.String	SCRIPT_add_annotation
static java.lang.String	SCRIPT_add_xref
static java.lang.String	SCRIPT_align
static java.lang.String	SCRIPT_ants
static java.lang.String	SCRIPT_balloon_text
static java.lang.String	SCRIPT_below_row
static java.lang.String	SCRIPT_box
static java.lang.String	SCRIPT_cds
static java.lang.String	SCRIPT_close
static java.lang.String	SCRIPT_close_3D
static java.lang.String	SCRIPT_close_wire
static java.lang.String	SCRIPT_cursor
static java.lang.String	SCRIPT_das
static java.lang.String	SCRIPT_define_complex
static java.lang.String	SCRIPT_deiconify
static java.lang.String	SCRIPT_delete
static java.lang.String	SCRIPT_download_files
static java.lang.String	SCRIPT_exit
static java.lang.String	SCRIPT_gaps
static java.lang.String	SCRIPT_gff_expasy
static java.lang.String	SCRIPT_hide
static java.lang.String	SCRIPT_icon
static java.lang.String	SCRIPT_iconify
static java.lang.String	SCRIPT_infer_xyz
static java.lang.String	SCRIPT_jalview
static java.lang.String	SCRIPT_load
static java.lang.String	SCRIPT_msec
static java.lang.String	SCRIPT_new_aminoacid_selection
static java.lang.String	SCRIPT_new_nucleotide_selection
static java.lang.String	SCRIPT_open_3D
static java.lang.String	SCRIPT_plugin
static java.lang.String	SCRIPT_remove_xref
static java.lang.String	SCRIPT_rh_compound
static java.lang.String	SCRIPT_rh_ec
static java.lang.String	SCRIPT_rh_name
static java.lang.String	SCRIPT_rh_organism
static java.lang.String	SCRIPT_rotate_translate
static java.lang.String	SCRIPT_rotate_translate_complex
static java.lang.String	SCRIPT_scroll_to
static java.lang.String	SCRIPT_search_uniprot
static java.lang.String	SCRIPT_search_uniprot_fast
static java.lang.String	SCRIPT_secondary_structure
static java.lang.String	SCRIPT_select
static java.lang.String	SCRIPT_select_3D
static java.lang.String	SCRIPT_selection_to_3D
static java.lang.String	SCRIPT_seqvista
static java.lang.String	SCRIPT_set_annotation
static java.lang.String	SCRIPT_sleep
static java.lang.String	SCRIPT_spice
static java.lang.String	SCRIPT_src
static java.lang.String	SCRIPT_superimpose
static java.lang.String	SCRIPT_superimpose_complex
static java.lang.String	SCRIPT_to_3D
static java.lang.String	SCRIPT_to_front_3D
static java.lang.String	SCRIPT_to_row
static java.lang.String	SCRIPT_to_structure_viewer
static java.lang.String	SCRIPT_toFront
static java.lang.String	SCRIPT_tree
static java.lang.String	SCRIPT_unhide
static java.lang.String	SCRIPT_unselect
static java.lang.String	SCRIPT_use_3D_viewer
static java.lang.String	SCRIPT_wait_for
static java.lang.String	SCRIPT_wire

Fields inherited from interface charite.christo.ChRunnable

APPEND, COLUMN_TITLE, DOWNLOAD_FINISHED, GET_PANEL, ICON, INTERPRET_LINE, IS_DRAG4XY, ITEM_TEXT, MODIFY_RENDERER_COMPONENT, PROGRESS, REPAINT_CURSOR, SAY_DOWNLOADING, SET_ICON_IMAGE, SET_TREE_VALUE, SHOW_IN_FRAME, TAB_TEXT, TIP_TEXT

Constructor Summary

StrapScriptInterpreter()

Method Summary

static java.lang.String[]	allScriptCommands()
void	interpretScript(BA script)
static BA	log()
java.lang.Object	run(java.lang.String id, java.lang.Object arg)
void	runScripts(BA[] scriptOrUrl)
static void	showScriptText(java.util.List<BA> v, boolean showError)
java.lang.Thread	thread_runScripts(BA[] scriptOrUrl)
static java.lang.Thread	thread_showScriptText(java.util.List<BA> v, boolean showError)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

PREFIX_rh

public static final java.lang.String PREFIX_rh

See Also:

Constant Field Values

SCRIPT_rh_name

public static final java.lang.String SCRIPT_rh_name

See Also:

Constant Field Values

SCRIPT_rh_organism

public static final java.lang.String SCRIPT_rh_organism

See Also:

Constant Field Values

SCRIPT_rh_compound

public static final java.lang.String SCRIPT_rh_compound

See Also:

Constant Field Values

SCRIPT_rh_ec

public static final java.lang.String SCRIPT_rh_ec

See Also:

Constant Field Values

SCRIPT_search_uniprot

public static final java.lang.String SCRIPT_search_uniprot

See Also:

Constant Field Values

SCRIPT_balloon_text

public static final java.lang.String SCRIPT_balloon_text

See Also:

Constant Field Values

SCRIPT_search_uniprot_fast

public static final java.lang.String SCRIPT_search_uniprot_fast

See Also:

Constant Field Values

SCRIPT_download_files

public static final java.lang.String SCRIPT_download_files

See Also:

Constant Field Values

SCRIPT_define_complex

public static final java.lang.String SCRIPT_define_complex

See Also:

Constant Field Values

SCRIPT_rotate_translate_complex

public static final java.lang.String SCRIPT_rotate_translate_complex

See Also:

Constant Field Values

SCRIPT_superimpose_complex

public static final java.lang.String SCRIPT_superimpose_complex

See Also:

Constant Field Values

SCRIPT_use_3D_viewer

public static final java.lang.String SCRIPT_use_3D_viewer

See Also:

Constant Field Values

SCRIPT_to_3D

public static final java.lang.String SCRIPT_to_3D

See Also:

Constant Field Values

SCRIPT_selection_to_3D

public static final java.lang.String SCRIPT_selection_to_3D

See Also:

Constant Field Values

SCRIPT_select_3D

public static final java.lang.String SCRIPT_select_3D

See Also:

Constant Field Values

SCRIPT_open_3D

public static final java.lang.String SCRIPT_open_3D

See Also:

Constant Field Values

SCRIPT_close_3D

public static final java.lang.String SCRIPT_close_3D

See Also:

Constant Field Values

SCRIPT_to_front_3D

public static final java.lang.String SCRIPT_to_front_3D

See Also:

Constant Field Values

SCRIPT_aa_sequence

public static final java.lang.String SCRIPT_aa_sequence

See Also:

Constant Field Values

SCRIPT_to_structure_viewer

public static final java.lang.String SCRIPT_to_structure_viewer

See Also:

Constant Field Values

SCRIPT_accession_id

public static final java.lang.String SCRIPT_accession_id

See Also:

Constant Field Values

SCRIPT_add_annotation

public static final java.lang.String SCRIPT_add_annotation

See Also:

Constant Field Values

SCRIPT_add_xref

public static final java.lang.String SCRIPT_add_xref

See Also:

Constant Field Values

SCRIPT_align

public static final java.lang.String SCRIPT_align

See Also:

Constant Field Values

SCRIPT_below_row

public static final java.lang.String SCRIPT_below_row

See Also:

Constant Field Values

SCRIPT_box

public static final java.lang.String SCRIPT_box

See Also:

Constant Field Values

SCRIPT_ants

public static final java.lang.String SCRIPT_ants

See Also:

Constant Field Values

SCRIPT_cds

public static final java.lang.String SCRIPT_cds

See Also:

Constant Field Values

SCRIPT_close

public static final java.lang.String SCRIPT_close

See Also:

Constant Field Values

SCRIPT_delete

public static final java.lang.String SCRIPT_delete

See Also:

Constant Field Values

SCRIPT_wire

public static final java.lang.String SCRIPT_wire

See Also:

Constant Field Values

SCRIPT_close_wire

public static final java.lang.String SCRIPT_close_wire

See Also:

Constant Field Values

SCRIPT_cursor

public static final java.lang.String SCRIPT_cursor

See Also:

Constant Field Values

SCRIPT_deiconify

public static final java.lang.String SCRIPT_deiconify

See Also:

Constant Field Values

SCRIPT_gaps

public static final java.lang.String SCRIPT_gaps

See Also:

Constant Field Values

SCRIPT_hide

public static final java.lang.String SCRIPT_hide

See Also:

Constant Field Values

SCRIPT_icon

public static final java.lang.String SCRIPT_icon

See Also:

Constant Field Values

SCRIPT_iconify

public static final java.lang.String SCRIPT_iconify

See Also:

Constant Field Values

SCRIPT_load

public static final java.lang.String SCRIPT_load

See Also:

Constant Field Values

SCRIPT_sleep

public static final java.lang.String SCRIPT_sleep

See Also:

Constant Field Values

SCRIPT_secondary_structure

public static final java.lang.String SCRIPT_secondary_structure

See Also:

Constant Field Values

SCRIPT_new_nucleotide_selection

public static final java.lang.String SCRIPT_new_nucleotide_selection

See Also:

Constant Field Values

SCRIPT_new_aminoacid_selection

public static final java.lang.String SCRIPT_new_aminoacid_selection

See Also:

Constant Field Values

SCRIPT_plugin

public static final java.lang.String SCRIPT_plugin

See Also:

Constant Field Values

SCRIPT_remove_xref

public static final java.lang.String SCRIPT_remove_xref

See Also:

Constant Field Values

SCRIPT_rotate_translate

public static final java.lang.String SCRIPT_rotate_translate

See Also:

Constant Field Values

SCRIPT_scroll_to

public static final java.lang.String SCRIPT_scroll_to

See Also:

Constant Field Values

SCRIPT_select

public static final java.lang.String SCRIPT_select

See Also:

Constant Field Values

SCRIPT_seqvista

public static final java.lang.String SCRIPT_seqvista

See Also:

Constant Field Values

SCRIPT_jalview

public static final java.lang.String SCRIPT_jalview

See Also:

Constant Field Values

SCRIPT_spice

public static final java.lang.String SCRIPT_spice

See Also:

Constant Field Values

SCRIPT_set_annotation

public static final java.lang.String SCRIPT_set_annotation

See Also:

Constant Field Values

SCRIPT_superimpose

public static final java.lang.String SCRIPT_superimpose

See Also:

Constant Field Values

SCRIPT_to_row

public static final java.lang.String SCRIPT_to_row

See Also:

Constant Field Values

SCRIPT_tree

public static final java.lang.String SCRIPT_tree

See Also:

Constant Field Values

SCRIPT_unhide

public static final java.lang.String SCRIPT_unhide

See Also:

Constant Field Values

SCRIPT_unselect

public static final java.lang.String SCRIPT_unselect

See Also:

Constant Field Values

SCRIPT_infer_xyz

public static final java.lang.String SCRIPT_infer_xyz

See Also:

Constant Field Values

SCRIPT_das

public static final java.lang.String SCRIPT_das

See Also:

Constant Field Values

SCRIPT_gff_expasy

public static final java.lang.String SCRIPT_gff_expasy

See Also:

Constant Field Values

SCRIPT_toFront

public static final java.lang.String SCRIPT_toFront

See Also:

Constant Field Values

SCRIPT_src

public static final java.lang.String SCRIPT_src

See Also:

Constant Field Values

SCRIPT_msec

public static final java.lang.String SCRIPT_msec

See Also:

Constant Field Values

SCRIPT_exit

public static final java.lang.String SCRIPT_exit

See Also:

Constant Field Values

SCRIPT_wait_for

public static final java.lang.String SCRIPT_wait_for

See Also:

Constant Field Values

ANY_VIEWER

public static final java.lang.String ANY_VIEWER

See Also:

Constant Field Values

ANY_WIRE

public static final java.lang.String ANY_WIRE

See Also:

Constant Field Values

Constructor Detail

StrapScriptInterpreter

public StrapScriptInterpreter()

Method Detail

interpretScript

public void interpretScript(BA script)

log

public static BA log()

run

public java.lang.Object run(java.lang.String id,
                            java.lang.Object arg)

Specified by:

run in interface ChRunnable

allScriptCommands

public static java.lang.String[] allScriptCommands()

thread_runScripts

public java.lang.Thread thread_runScripts(BA[] scriptOrUrl)

runScripts

public void runScripts(BA[] scriptOrUrl)

thread_showScriptText

public static java.lang.Thread thread_showScriptText(java.util.List<BA> v,
                                                     boolean showError)

showScriptText

public static void showScriptText(java.util.List<BA> v,
                                  boolean showError)