'STRAP:multiple sequence alignments '

charite.christo
Class UniqueList<T>

java.lang.Object
  extended by charite.christo.UniqueList<T>
All Implemented Interfaces:
ChRunnable, HasModiCount, HasPropertyMap, HasRenderer, java.lang.Iterable<T>, java.util.Collection<T>, java.util.List<T>

public class UniqueList<T>
extends java.lang.Object
implements java.util.List<T>, HasRenderer, ChRunnable, HasPropertyMap, HasModiCount


Field Summary
static int ASSERT_EDT
           
static int HOOK_ACCESS
           
static int HOOK_CHANGE
           
static int TO_STRING_SUPER
           
static int UNIQUE
           
static int USE_HASH_SET
           
 
Fields inherited from interface charite.christo.HasRenderer
JLIST, STRIKE_THROUGH
 
Fields inherited from interface charite.christo.ChRunnable
APPEND, COLUMN_TITLE, DOWNLOAD_FINISHED, GET_PANEL, ICON, INTERPRET_LINE, IS_DRAG4XY, ITEM_TEXT, MODIFY_RENDERER_COMPONENT, PROGRESS, REPAINT_CURSOR, SAY_DOWNLOADING, SET_ICON_IMAGE, SET_TREE_VALUE, SHOW_IN_FRAME, TAB_TEXT, TIP_TEXT
 
Constructor Summary
UniqueList(java.lang.Class c)
           
 
Method Summary
 void add(int idx, T s)
           
 boolean add(T s)
           
 boolean addAll(java.util.Collection<? extends T> c)
           
 boolean addAll(int pos, java.util.Collection<? extends T> c)
           
 boolean addAllA(T... oo)
           
 UniqueList addHook(int type, ChRunnable r, java.lang.String s)
           
 UniqueList addOptions(long opt)
           
 T[] asArray()
           
 void clear()
           
 boolean contains(java.lang.Object o)
           
 boolean containsAll(java.util.Collection<?> c)
           
 java.lang.Object[] elementData()
           
 UniqueList ensureCapacity(int n)
           
 boolean equals(java.lang.Object o)
           
 T get(int i)
           
 java.lang.Class getClazz()
           
 java.util.Map getPropertyMap(boolean create)
           
 java.lang.Object getRenderer(long options, long[] rendOptions)
           
 java.lang.String getText()
           
 UniqueList<T> i(javax.swing.Icon icon)
           
 UniqueList<T> i(java.lang.String icon)
           
 int indexOf(java.lang.Object o)
           
 int indexOf(java.lang.Object o, int from0, int to0)
           
 boolean isEmpty()
           
 java.util.Iterator<T> iterator()
           
 int lastIndexOf(java.lang.Object o)
           
 UniqueList like(java.lang.Object l)
           
 java.util.ListIterator<T> listIterator()
           
 java.util.ListIterator<T> listIterator(int i)
           
 int modificationCount()
           
 T remove(int i)
           
 boolean remove(java.lang.Object o)
           
 boolean removeAll(java.util.Collection<?> c)
           
 boolean retainAll(java.util.Collection c)
           
 UniqueList rmOptions(long opt)
           
 java.lang.Object run(java.lang.String id, java.lang.Object arg)
           
 T set(int i, T o)
           
 int size()
           
 java.util.List<T> subList(int from, int to)
           
 UniqueList<T> t(java.lang.String text)
           
 java.lang.Object[] toArray()
           
<T> T[]
toArray(T[] a)
           
 java.lang.String toString()
           
 java.util.List<T> v()
           
 
Methods inherited from class java.lang.Object
getClass, hashCode, notify, notifyAll, wait, wait, wait
 
Methods inherited from interface java.util.List
hashCode
 

Field Detail

UNIQUE

public static final int UNIQUE
See Also:
Constant Field Values

USE_HASH_SET

public static final int USE_HASH_SET
See Also:
Constant Field Values

ASSERT_EDT

public static final int ASSERT_EDT
See Also:
Constant Field Values

TO_STRING_SUPER

public static final int TO_STRING_SUPER
See Also:
Constant Field Values

HOOK_ACCESS

public static final int HOOK_ACCESS
See Also:
Constant Field Values

HOOK_CHANGE

public static final int HOOK_CHANGE
See Also:
Constant Field Values
Constructor Detail

UniqueList

public UniqueList(java.lang.Class c)
Method Detail

v

public java.util.List<T> v()

getClazz

public java.lang.Class getClazz()

rmOptions

public UniqueList rmOptions(long opt)

addOptions

public UniqueList addOptions(long opt)

modificationCount

public int modificationCount()
Specified by:
modificationCount in interface HasModiCount

equals

public boolean equals(java.lang.Object o)
Specified by:
equals in interface java.util.Collection<T>
Specified by:
equals in interface java.util.List<T>
Overrides:
equals in class java.lang.Object

getPropertyMap

public java.util.Map getPropertyMap(boolean create)
Specified by:
getPropertyMap in interface HasPropertyMap

indexOf

public int indexOf(java.lang.Object o,
                   int from0,
                   int to0)

ensureCapacity

public UniqueList ensureCapacity(int n)

subList

public java.util.List<T> subList(int from,
                                 int to)
Specified by:
subList in interface java.util.List<T>

size

public int size()
Specified by:
size in interface java.util.Collection<T>
Specified by:
size in interface java.util.List<T>

isEmpty

public boolean isEmpty()
Specified by:
isEmpty in interface java.util.Collection<T>
Specified by:
isEmpty in interface java.util.List<T>

listIterator

public java.util.ListIterator<T> listIterator()
Specified by:
listIterator in interface java.util.List<T>

listIterator

public java.util.ListIterator<T> listIterator(int i)
Specified by:
listIterator in interface java.util.List<T>

iterator

public java.util.Iterator<T> iterator()
Specified by:
iterator in interface java.lang.Iterable<T>
Specified by:
iterator in interface java.util.Collection<T>
Specified by:
iterator in interface java.util.List<T>

toArray

public java.lang.Object[] toArray()
Specified by:
toArray in interface java.util.Collection<T>
Specified by:
toArray in interface java.util.List<T>

toArray

public <T> T[] toArray(T[] a)
Specified by:
toArray in interface java.util.Collection<T>
Specified by:
toArray in interface java.util.List<T>

containsAll

public boolean containsAll(java.util.Collection<?> c)
Specified by:
containsAll in interface java.util.Collection<T>
Specified by:
containsAll in interface java.util.List<T>

contains

public boolean contains(java.lang.Object o)
Specified by:
contains in interface java.util.Collection<T>
Specified by:
contains in interface java.util.List<T>

indexOf

public int indexOf(java.lang.Object o)
Specified by:
indexOf in interface java.util.List<T>

lastIndexOf

public int lastIndexOf(java.lang.Object o)
Specified by:
lastIndexOf in interface java.util.List<T>

get

public T get(int i)
Specified by:
get in interface java.util.List<T>

remove

public T remove(int i)
Specified by:
remove in interface java.util.List<T>

retainAll

public boolean retainAll(java.util.Collection c)
Specified by:
retainAll in interface java.util.Collection<T>
Specified by:
retainAll in interface java.util.List<T>

removeAll

public boolean removeAll(java.util.Collection<?> c)
Specified by:
removeAll in interface java.util.Collection<T>
Specified by:
removeAll in interface java.util.List<T>

clear

public final void clear()
Specified by:
clear in interface java.util.Collection<T>
Specified by:
clear in interface java.util.List<T>

add

public boolean add(T s)
Specified by:
add in interface java.util.Collection<T>
Specified by:
add in interface java.util.List<T>

addAll

public boolean addAll(java.util.Collection<? extends T> c)
Specified by:
addAll in interface java.util.Collection<T>
Specified by:
addAll in interface java.util.List<T>

addAll

public boolean addAll(int pos,
                      java.util.Collection<? extends T> c)
Specified by:
addAll in interface java.util.List<T>

add

public final void add(int idx,
                      T s)
Specified by:
add in interface java.util.List<T>

remove

public boolean remove(java.lang.Object o)
Specified by:
remove in interface java.util.Collection<T>
Specified by:
remove in interface java.util.List<T>

set

public T set(int i,
             T o)
Specified by:
set in interface java.util.List<T>

asArray

public T[] asArray()

elementData

public java.lang.Object[] elementData()

addAllA

public boolean addAllA(T... oo)

getText

public java.lang.String getText()

t

public UniqueList<T> t(java.lang.String text)

i

public UniqueList<T> i(javax.swing.Icon icon)

i

public UniqueList<T> i(java.lang.String icon)

like

public UniqueList like(java.lang.Object l)

toString

public java.lang.String toString()
Overrides:
toString in class java.lang.Object

getRenderer

public java.lang.Object getRenderer(long options,
                                    long[] rendOptions)
Specified by:
getRenderer in interface HasRenderer

addHook

public UniqueList addHook(int type,
                          ChRunnable r,
                          java.lang.String s)

run

public java.lang.Object run(java.lang.String id,
                            java.lang.Object arg)
Specified by:
run in interface ChRunnable

'STRAP:multiple sequence alignments '

'The most important classes are StrapAlign, Protein and StrapEvent.'