'STRAP:multiple sequence alignments '

charite.christo.protein
Interface VisibleIn123

All Superinterfaces:
Colored
All Known Implementing Classes:
AbstractVisibleIn123, BasicResidueSelection, DialogPlot, Distance3DToCursor, Distance3DToHetero, ResidueAnnotation

public interface VisibleIn123
extends Colored

Determins the style how a selection is visualized and where it is visualized. It can be shown in the alignment, the scrollbar and the 3D-visualization.


Field Summary
static int ANYWHERE
           
static long ARROW_HEADS
           
static int BIT_SHIFT_LINE
           
static int HTML
           
static int JALVIEW
           
static int NO_FLASH
           
static int SB
           
static int SEQUENCE
           
static int STRUCTURE
           
static int STYLE_BACKGROUND
           
static int STYLE_CIRCLE
           
static int STYLE_CURSOR
           
static int STYLE_DOTTED
           
static int STYLE_HIDDEN
           
static int STYLE_IMAGE
           
static int STYLE_IMAGE_LUCID
           
static int STYLE_LOWER_HALF_BACKGROUND
           
static int STYLE_UNDERLINE
           
static int STYLE_UPPER_HALF_BACKGROUND
           
 
Method Summary
 java.awt.Color getColor()
           
 int getStyle()
           
 int getVisibleWhere()
          e.g.
 void setStyle(int s)
           
 void setVisibleWhere(int w)
           
 
Methods inherited from interface charite.christo.Colored
setColor
 

Field Detail

STYLE_BACKGROUND

static final int STYLE_BACKGROUND
See Also:
Constant Field Values

STYLE_IMAGE

static final int STYLE_IMAGE
See Also:
Constant Field Values

STYLE_IMAGE_LUCID

static final int STYLE_IMAGE_LUCID
See Also:
Constant Field Values

STYLE_CIRCLE

static final int STYLE_CIRCLE
See Also:
Constant Field Values

STYLE_DOTTED

static final int STYLE_DOTTED
See Also:
Constant Field Values

STYLE_LOWER_HALF_BACKGROUND

static final int STYLE_LOWER_HALF_BACKGROUND
See Also:
Constant Field Values

STYLE_UPPER_HALF_BACKGROUND

static final int STYLE_UPPER_HALF_BACKGROUND
See Also:
Constant Field Values

STYLE_HIDDEN

static final int STYLE_HIDDEN
See Also:
Constant Field Values

STYLE_UNDERLINE

static final int STYLE_UNDERLINE
See Also:
Constant Field Values

STYLE_CURSOR

static final int STYLE_CURSOR
See Also:
Constant Field Values

NO_FLASH

static final int NO_FLASH
See Also:
Constant Field Values

SEQUENCE

static final int SEQUENCE
See Also:
Constant Field Values

STRUCTURE

static final int STRUCTURE
See Also:
Constant Field Values

SB

static final int SB
See Also:
Constant Field Values

HTML

static final int HTML
See Also:
Constant Field Values

JALVIEW

static final int JALVIEW
See Also:
Constant Field Values

ANYWHERE

static final int ANYWHERE
See Also:
Constant Field Values

BIT_SHIFT_LINE

static final int BIT_SHIFT_LINE
See Also:
Constant Field Values

ARROW_HEADS

static final long ARROW_HEADS
See Also:
Constant Field Values
Method Detail

getColor

java.awt.Color getColor()
Specified by:
getColor in interface Colored

getVisibleWhere

int getVisibleWhere()
e.g. STRUCTURE | SEQUENCE means visible in 3d and 1d


setVisibleWhere

void setVisibleWhere(int w)

getStyle

int getStyle()

setStyle

void setStyle(int s)

'STRAP:multiple sequence alignments '

'The most important classes are StrapAlign, Protein and StrapEvent.'