charite.christo.strap
Class Distance3DToCursor

java.lang.Object
  charite.christo.protein.AbstractVisibleIn123
      charite.christo.protein.BasicResidueSelection
          charite.christo.strap.Distance3DToCursor

All Implemented Interfaces:

Colored, HasImage, HasName, HasPropertyMap, HasRenderer, HasSharedControlPanel, HasWeakRef, IsEnabled, NeedsSharedInstance, HasProtein, ResidueSelection, StrapListener, VisibleIn123, java.util.EventListener, javax.swing.event.ChangeListener

public class Distance3DToCursor
extends BasicResidueSelection
implements StrapListener, IsEnabled, HasSharedControlPanel, HasImage, javax.swing.event.ChangeListener

HELP In DIALOG:DialogSelectionOfResiduesMain the method COMBO:Distance3DToCursor is selected.
The Euclidean distances between the cursor and all C-alpha atom coordinates are permanently monitored when the cursor is moved. This way amino acids equivalent to the amino acid at the cursor position show up in all proteins. Before this can be allied the proteins must be oriented in 3D-space in the same way: DIALOG:DialogSuperimpose3D.
SEE_DIALOG:DialogSelectionOfResiduesMain SEE_DIALOG:DialogSuperimpose3D

Field Summary

Fields inherited from class charite.christo.protein.BasicResidueSelection

OFFSET_IS_1ST_IDX

Fields inherited from class charite.christo.protein.AbstractVisibleIn123

WEAK_REF

Fields inherited from interface charite.christo.protein.ResidueSelection

NAME_BACKBONE, NAME_CURSOR, NAME_MOUSE_OVER, NAME_STANDARD, NONE

Fields inherited from interface charite.christo.HasRenderer

JLIST, STRIKE_THROUGH

Fields inherited from interface charite.christo.protein.VisibleIn123

ANYWHERE, ARROW_HEADS, BIT_SHIFT_LINE, HTML, JALVIEW, NO_FLASH, SEQUENCE, STRUCTURE, STYLE_BACKGROUND, STYLE_CIRCLE, STYLE_CURSOR, STYLE_DOTTED, STYLE_HIDDEN, STYLE_IMAGE, STYLE_IMAGE_LUCID, STYLE_LOWER_HALF_BACKGROUND, STYLE_UNDERLINE, STYLE_UPPER_HALF_BACKGROUND

Constructor Summary

Distance3DToCursor()

Method Summary

boolean[]	getSelectedAminoacids()
javax.swing.JComponent	getSharedControlPanel()
java.lang.Object	getSharedInstance()
void	handleEvent(StrapEvent ev)
boolean	isEnabled(java.lang.Object o)
void	setSharedInstance(java.lang.Object shared)
void	stateChanged(javax.swing.event.ChangeEvent ev)
java.lang.String	toString()

Methods inherited from class charite.christo.protein.BasicResidueSelection

changeSelectedAA, getName, getProtein, getRenderer, getRGB, getSelectedAminoacidsOffset, selectRange, setAminoSelected, setName, setProtein, setSelectedAminoacids

Methods inherited from class charite.christo.protein.AbstractVisibleIn123

getColor, getImage, getPropertyMap, getStyle, getVisibleWhere, getWeakRef, imageBall, newComboStyle, setColor, setImage, setStyle, setVisibleWhere

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface charite.christo.HasImage

getImage

Constructor Detail

Distance3DToCursor

public Distance3DToCursor()

Method Detail

getSharedControlPanel

public javax.swing.JComponent getSharedControlPanel()

Specified by:

getSharedControlPanel in interface HasSharedControlPanel

setSharedInstance

public void setSharedInstance(java.lang.Object shared)

Specified by:

setSharedInstance in interface NeedsSharedInstance

Overrides:

setSharedInstance in class BasicResidueSelection

getSharedInstance

public java.lang.Object getSharedInstance()

Specified by:

getSharedInstance in interface NeedsSharedInstance

Overrides:

getSharedInstance in class BasicResidueSelection

toString

public java.lang.String toString()

Overrides:

toString in class BasicResidueSelection

isEnabled

public boolean isEnabled(java.lang.Object o)

Specified by:

isEnabled in interface IsEnabled

handleEvent

public final void handleEvent(StrapEvent ev)

Specified by:

handleEvent in interface StrapListener

getSelectedAminoacids

public boolean[] getSelectedAminoacids()

Specified by:

getSelectedAminoacids in interface ResidueSelection

Overrides:

getSelectedAminoacids in class BasicResidueSelection

Returns:

true for each selected residue.

stateChanged

public void stateChanged(javax.swing.event.ChangeEvent ev)

Specified by:

stateChanged in interface javax.swing.event.ChangeListener