charite.christo.protein
Class BasicResidueSelection

java.lang.Object
  charite.christo.protein.AbstractVisibleIn123
      charite.christo.protein.BasicResidueSelection

All Implemented Interfaces:

Colored, HasImage, HasName, HasPropertyMap, HasRenderer, HasWeakRef, HasProtein, ResidueSelection, VisibleIn123

Direct Known Subclasses:

Distance3DToCursor, Distance3DToHetero

public class BasicResidueSelection
extends AbstractVisibleIn123
implements ResidueSelection, HasName, HasRenderer

A skelleton of an Selection of Residues ResidueSelection.

Field Summary

static int

OFFSET_IS_1ST_IDX

Fields inherited from class charite.christo.protein.AbstractVisibleIn123

WEAK_REF

Fields inherited from interface charite.christo.protein.ResidueSelection

NAME_BACKBONE, NAME_CURSOR, NAME_MOUSE_OVER, NAME_STANDARD, NONE

Fields inherited from interface charite.christo.HasRenderer

JLIST, STRIKE_THROUGH

Fields inherited from interface charite.christo.protein.VisibleIn123

ANYWHERE, ARROW_HEADS, BIT_SHIFT_LINE, HTML, JALVIEW, NO_FLASH, SEQUENCE, STRUCTURE, STYLE_BACKGROUND, STYLE_CIRCLE, STYLE_CURSOR, STYLE_DOTTED, STYLE_HIDDEN, STYLE_IMAGE, STYLE_IMAGE_LUCID, STYLE_LOWER_HALF_BACKGROUND, STYLE_UNDERLINE, STYLE_UPPER_HALF_BACKGROUND

Constructor Summary

BasicResidueSelection(int options)

BasicResidueSelection(ResidueSelection selection)

Method Summary

static boolean	changeSelectedAA(boolean[] sel, int offset, ResidueSelection s)
java.lang.String	getName()
Protein	getProtein()
java.lang.Object	getRenderer(long options, long[] rendOptions)
void	getRGB(int[] rgb)
boolean[]	getSelectedAminoacids()
int	getSelectedAminoacidsOffset()
java.lang.Object	getSharedInstance()
static boolean	selectRange(int from, int to, ResidueSelection s)
static boolean	setAminoSelected(boolean onOff, int iA, ResidueSelection s)
void	setName(java.lang.String s)
void	setProtein(Protein newP)
void	setSelectedAminoacids(boolean[] bb, int offset) The method body may be kept empty.
void	setSharedInstance(java.lang.Object shared)
java.lang.String	toString()

Methods inherited from class charite.christo.protein.AbstractVisibleIn123

getColor, getImage, getPropertyMap, getStyle, getVisibleWhere, getWeakRef, imageBall, newComboStyle, setColor, setImage, setStyle, setVisibleWhere

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

OFFSET_IS_1ST_IDX

public static final int OFFSET_IS_1ST_IDX

See Also:

Constant Field Values

Constructor Detail

BasicResidueSelection

public BasicResidueSelection(ResidueSelection selection)

BasicResidueSelection

public BasicResidueSelection(int options)

Method Detail

setProtein

public void setProtein(Protein newP)

Specified by:

setProtein in interface ResidueSelection

getProtein

public Protein getProtein()

Specified by:

getProtein in interface HasProtein

Specified by:

getProtein in interface ResidueSelection

getSelectedAminoacids

public boolean[] getSelectedAminoacids()

Specified by:

getSelectedAminoacids in interface ResidueSelection

Returns:

true for each selected residue.

getSelectedAminoacidsOffset

public int getSelectedAminoacidsOffset()

Specified by:

getSelectedAminoacidsOffset in interface ResidueSelection

Returns:

A possible offset. For example {true,true} with offset 6 means that that the 6th and 7th residue is selected.

setSelectedAminoacids

public void setSelectedAminoacids(boolean[] bb,
                                  int offset)

Description copied from interface: ResidueSelection

The method body may be kept empty.

Specified by:

setSelectedAminoacids in interface ResidueSelection

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object

setName

public void setName(java.lang.String s)

getName

public java.lang.String getName()

Specified by:

getName in interface HasName

getRenderer

public java.lang.Object getRenderer(long options,
                                    long[] rendOptions)

Specified by:

getRenderer in interface HasRenderer

getRGB

public void getRGB(int[] rgb)

selectRange

public static boolean selectRange(int from,
                                  int to,
                                  ResidueSelection s)

changeSelectedAA

public static boolean changeSelectedAA(boolean[] sel,
                                       int offset,
                                       ResidueSelection s)

setAminoSelected

public static boolean setAminoSelected(boolean onOff,
                                       int iA,
                                       ResidueSelection s)

setSharedInstance

public void setSharedInstance(java.lang.Object shared)

getSharedInstance

public java.lang.Object getSharedInstance()