charite.christo.strap.extensions
Class Distance3DToHetero

java.lang.Object
  charite.christo.protein.AbstractVisibleIn123
      charite.christo.protein.BasicResidueSelection
          charite.christo.strap.extensions.Distance3DToHetero

All Implemented Interfaces:

Colored, HasImage, HasName, HasPropertyMap, HasRenderer, HasSharedControlPanel, HasWeakRef, IsEnabled, NeedsSharedInstance, HasProtein, ResidueSelection, StrapListener, VisibleIn123, java.awt.event.ActionListener, java.util.EventListener

public class Distance3DToHetero
extends BasicResidueSelection
implements StrapListener, IsEnabled, HasSharedControlPanel, java.awt.event.ActionListener

HELP A white space separated list of hetero-groups is needed. Hetero-groups can be specified:

1. The name E.G. FAD, FMN, HEM.
2. The number as found in the pdb file.
3. In case of DNA/RNA a capital letter which designates the chain letter

Limitations: Currently only c-alpha atoms. SEE_CLASS:Distance3DToCursor

Field Summary

static java.lang.Object

KEY_DEFAULT_HETERO

Fields inherited from class charite.christo.protein.BasicResidueSelection

OFFSET_IS_1ST_IDX

Fields inherited from class charite.christo.protein.AbstractVisibleIn123

WEAK_REF

Fields inherited from interface charite.christo.protein.ResidueSelection

NAME_BACKBONE, NAME_CURSOR, NAME_MOUSE_OVER, NAME_STANDARD, NONE

Fields inherited from interface charite.christo.HasRenderer

JLIST, STRIKE_THROUGH

Fields inherited from interface charite.christo.protein.VisibleIn123

ANYWHERE, ARROW_HEADS, BIT_SHIFT_LINE, HTML, JALVIEW, NO_FLASH, SEQUENCE, STRUCTURE, STYLE_BACKGROUND, STYLE_CIRCLE, STYLE_CURSOR, STYLE_DOTTED, STYLE_HIDDEN, STYLE_IMAGE, STYLE_IMAGE_LUCID, STYLE_LOWER_HALF_BACKGROUND, STYLE_UNDERLINE, STYLE_UPPER_HALF_BACKGROUND

Constructor Summary

Distance3DToHetero()

Method Summary

void	actionPerformed(java.awt.event.ActionEvent ev)
boolean[]	getSelectedAminoacids()
javax.swing.JComponent	getSharedControlPanel()
void	handleEvent(StrapEvent ev)
boolean	isEnabled(java.lang.Object o)
static void	setDefaultHeteroCode(java.lang.String s)
void	setSelectedAminoacids(boolean[] bb, int offset) The method body may be kept empty.
java.lang.String	toString()

Methods inherited from class charite.christo.protein.BasicResidueSelection

changeSelectedAA, getName, getProtein, getRenderer, getRGB, getSelectedAminoacidsOffset, getSharedInstance, selectRange, setAminoSelected, setName, setProtein, setSharedInstance

Methods inherited from class charite.christo.protein.AbstractVisibleIn123

getColor, getImage, getPropertyMap, getStyle, getVisibleWhere, getWeakRef, imageBall, newComboStyle, setColor, setImage, setStyle, setVisibleWhere

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface charite.christo.NeedsSharedInstance

getSharedInstance, setSharedInstance

Field Detail

KEY_DEFAULT_HETERO

public static final java.lang.Object KEY_DEFAULT_HETERO

Constructor Detail

Distance3DToHetero

public Distance3DToHetero()

Method Detail

toString

public java.lang.String toString()

Overrides:

toString in class BasicResidueSelection

isEnabled

public boolean isEnabled(java.lang.Object o)

Specified by:

isEnabled in interface IsEnabled

getSharedControlPanel

public javax.swing.JComponent getSharedControlPanel()

Specified by:

getSharedControlPanel in interface HasSharedControlPanel

setDefaultHeteroCode

public static void setDefaultHeteroCode(java.lang.String s)

handleEvent

public final void handleEvent(StrapEvent ev)

Specified by:

handleEvent in interface StrapListener

setSelectedAminoacids

public void setSelectedAminoacids(boolean[] bb,
                                  int offset)

Description copied from interface: ResidueSelection

The method body may be kept empty.

Specified by:

setSelectedAminoacids in interface ResidueSelection

Overrides:

setSelectedAminoacids in class BasicResidueSelection

getSelectedAminoacids

public boolean[] getSelectedAminoacids()

Specified by:

getSelectedAminoacids in interface ResidueSelection

Overrides:

getSelectedAminoacids in class BasicResidueSelection

Returns:

true for each selected residue.

actionPerformed

public void actionPerformed(java.awt.event.ActionEvent ev)

Specified by:

actionPerformed in interface java.awt.event.ActionListener