charite.christo
Class ChIcon

java.lang.Object
  java.awt.image.ImageFilter
      java.awt.image.RGBImageFilter
          charite.christo.ChIcon

All Implemented Interfaces:

ChRunnable, java.awt.image.ImageConsumer, java.lang.Cloneable

public final class ChIcon
extends java.awt.image.RGBImageFilter
implements ChRunnable

HELP Image icons are a visual aid to recognize proteins and residue annotations. They are associated to proteins or annotations by WIKI:Drag_and_drop (See http://www.bioinformatics.org/strap/dragProteinLink.html). Supported formats are gif, png, bmp and jpg. Images in Web pages within the Web browser can only be dragged if they do not serve as a hyper-link. Obtaining icons:

• http://images.google.com/images?imgsz=icon&q=insects
• http://icone.goldenweb.it?l=en

Species Icons: Some protein files have a record of the species name. These species names can be used to set a suitable icon for the selected proteins: BUTTON:charite.christo.strap.StrapAlign#button(CMD_SPECIES_ICONS)!.

Structure Icons: To download the 3d-structure thumb-nails from the PDB and use them as icons for the selected proteins, press this button: BUTTON:charite.christo.strap.StrapAlign#button(CMD_PDB_ICONS)!.

To delete the icons of all selected proteins press this button: BUTTON:charite.christo.strap.StrapAlign#button(CMD_DEL_ICONS)!.

Mapping of species and icons: A customizable table that maps species to images can be inspected: CUSTOMIZE:speciesIcons! To deactivate an icon type, associated "NONE".

To see a list of currently loaded images press BUTTON:charite.christo.strap.StrapAlign#button(CMD_TABLE_ICONS)!.

Field Summary

static int	FILTER_BRIGHTER_4
static int	FILTER_GRAY
static int	FILTER_MONOCHROME
static int	FILTER_WHITE_TO_TRANSPARENT
static java.lang.String	TRANSPARENT

Fields inherited from interface charite.christo.ChRunnable

APPEND, COLUMN_TITLE, DOWNLOAD_FINISHED, GET_PANEL, ICON, INTERPRET_LINE, IS_DRAG4XY, ITEM_TEXT, MODIFY_RENDERER_COMPONENT, PROGRESS, REPAINT_CURSOR, SAY_DOWNLOADING, SET_ICON_IMAGE, SET_TREE_VALUE, SHOW_IN_FRAME, TAB_TEXT, TIP_TEXT

Fields inherited from interface java.awt.image.ImageConsumer

COMPLETESCANLINES, IMAGEABORTED, IMAGEERROR, RANDOMPIXELORDER, SINGLEFRAME, SINGLEFRAMEDONE, SINGLEPASS, STATICIMAGEDONE, TOPDOWNLEFTRIGHT

Constructor Summary

ChIcon()

Method Summary

static java.awt.Image	coloredBall(java.awt.Color color, java.awt.Component obs)
static void	drawCursor(java.awt.Graphics g, int x, int y, int w, int h, java.awt.image.ImageObserver obs)
static void	drawImage(java.awt.Graphics g, java.awt.Image im, int x, int y, int w, int h, java.awt.AlphaComposite com, java.awt.image.ImageObserver obs)
static java.io.File	exeForApp(java.lang.String application)
int	filterRGB(int x, int y, int rgb)
static java.awt.AlphaComposite	getAlphaComposite(int percent)
static java.awt.Cursor	getCursor(java.lang.String str, java.awt.Component obs)
static java.awt.image.RGBImageFilter	getFilter(int id)
static int	getHeight(java.awt.Image im)
static java.awt.Image	getImg(javax.swing.Icon ic)
static java.awt.Image	getScaledInstance(java.awt.Image im, int w, int h, java.lang.String fileExt, java.awt.Color bg)
static int	getWidth(java.awt.Image im)
static java.awt.Component	imageObserver()
static java.awt.Image	imSmiley(java.lang.String type, int d, int width, int height)
static ChIcon	instance(int id)
static javax.swing.ImageIcon	newFiltered(int filter, javax.swing.ImageIcon icn)
static java.awt.Image	newFiltered(java.awt.image.RGBImageFilter filter, java.awt.Image i)
static javax.swing.ImageIcon	newFiltered(java.awt.image.RGBImageFilter filter, javax.swing.ImageIcon icn)
static java.awt.image.RGBImageFilter	newFilterMonochrome(int color)
static void	requestImage(java.lang.String fileOrURL, ChRunnable target)
java.lang.Object	run(java.lang.String id, java.lang.Object arg)
static void	setImageObserver(java.awt.Component c)
static java.awt.Image	text2image(java.lang.String str, java.awt.Font font, java.awt.Color fg, java.awt.Color bg)

Methods inherited from class java.awt.image.RGBImageFilter

filterIndexColorModel, filterRGBPixels, setColorModel, setPixels, setPixels, substituteColorModel

Methods inherited from class java.awt.image.ImageFilter

clone, getFilterInstance, imageComplete, resendTopDownLeftRight, setDimensions, setHints, setProperties

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

FILTER_GRAY

public static final int FILTER_GRAY

See Also:

Constant Field Values

FILTER_BRIGHTER_4

public static final int FILTER_BRIGHTER_4

See Also:

Constant Field Values

FILTER_WHITE_TO_TRANSPARENT

public static final int FILTER_WHITE_TO_TRANSPARENT

See Also:

Constant Field Values

FILTER_MONOCHROME

public static final int FILTER_MONOCHROME

See Also:

Constant Field Values

TRANSPARENT

public static final java.lang.String TRANSPARENT

See Also:

Constant Field Values

Constructor Detail

ChIcon

public ChIcon()

Method Detail

getFilter

public static java.awt.image.RGBImageFilter getFilter(int id)

instance

public static ChIcon instance(int id)

newFilterMonochrome

public static java.awt.image.RGBImageFilter newFilterMonochrome(int color)

filterRGB

public int filterRGB(int x,
                     int y,
                     int rgb)

Specified by:

filterRGB in class java.awt.image.RGBImageFilter

newFiltered

public static javax.swing.ImageIcon newFiltered(int filter,
                                                javax.swing.ImageIcon icn)

newFiltered

public static javax.swing.ImageIcon newFiltered(java.awt.image.RGBImageFilter filter,
                                                javax.swing.ImageIcon icn)

newFiltered

public static java.awt.Image newFiltered(java.awt.image.RGBImageFilter filter,
                                         java.awt.Image i)

text2image

public static java.awt.Image text2image(java.lang.String str,
                                        java.awt.Font font,
                                        java.awt.Color fg,
                                        java.awt.Color bg)

imSmiley

public static java.awt.Image imSmiley(java.lang.String type,
                                      int d,
                                      int width,
                                      int height)

getImg

public static java.awt.Image getImg(javax.swing.Icon ic)

getScaledInstance

public static java.awt.Image getScaledInstance(java.awt.Image im,
                                               int w,
                                               int h,
                                               java.lang.String fileExt,
                                               java.awt.Color bg)

drawImage

public static void drawImage(java.awt.Graphics g,
                             java.awt.Image im,
                             int x,
                             int y,
                             int w,
                             int h,
                             java.awt.AlphaComposite com,
                             java.awt.image.ImageObserver obs)

getAlphaComposite

public static java.awt.AlphaComposite getAlphaComposite(int percent)

drawCursor

public static void drawCursor(java.awt.Graphics g,
                              int x,
                              int y,
                              int w,
                              int h,
                              java.awt.image.ImageObserver obs)

coloredBall

public static java.awt.Image coloredBall(java.awt.Color color,
                                         java.awt.Component obs)

getCursor

public static java.awt.Cursor getCursor(java.lang.String str,
                                        java.awt.Component obs)

imageObserver

public static java.awt.Component imageObserver()

setImageObserver

public static void setImageObserver(java.awt.Component c)

getHeight

public static int getHeight(java.awt.Image im)

getWidth

public static int getWidth(java.awt.Image im)

requestImage

public static void requestImage(java.lang.String fileOrURL,
                                ChRunnable target)

exeForApp

public static java.io.File exeForApp(java.lang.String application)

run

public java.lang.Object run(java.lang.String id,
                            java.lang.Object arg)

Specified by:

run in interface ChRunnable