'STRAP:multiple sequence alignments '

charite.christo.blast
Class BlastParser

java.lang.Object
  extended by charite.christo.blast.BlastParser

public class BlastParser
extends java.lang.Object

You probably do not need to use this class directly. Better use class BlastResult.


Field Summary
static int URL_EBI
           
 
Constructor Summary
BlastParser()
           
 
Method Summary
static void addToProteinDatabases(int type, java.lang.String[] db)
           
 int countHits()
           
 int countNovelHits()
           
 boolean parseXML(BA ba, int width, BlastResult blastResult)
           
 boolean parseXML(BA ba, int width, java.io.OutputStream fOut)
           
 void setDay(BA ba, boolean isNew)
           
 
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

URL_EBI

public static final int URL_EBI
See Also:
Constant Field Values
Constructor Detail

BlastParser

public BlastParser()
Method Detail

countNovelHits

public int countNovelHits()

countHits

public int countHits()

setDay

public void setDay(BA ba,
                   boolean isNew)

parseXML

public boolean parseXML(BA ba,
                        int width,
                        BlastResult blastResult)

parseXML

public boolean parseXML(BA ba,
                        int width,
                        java.io.OutputStream fOut)

addToProteinDatabases

public static void addToProteinDatabases(int type,
                                         java.lang.String[] db)

'STRAP:multiple sequence alignments '

'The most important classes are StrapAlign, Protein and StrapEvent.'