'STRAP:multiple sequence alignments '

Package charite.christo.blast

Interface Summary
SequenceBlaster A sequence blaster invokes a BLAST search with a given query sequence and returns the result as XML text.
 

Class Summary
AbstractBlaster  
BlastAlignment  
BlastDatabase  
Blaster_local_NCBI HELP NCBI-BLAST can be downloaded from ftp://ftp.ncbi.nih.gov/ or search GOOGLE{ ftp ncbi blast }.
Blaster_local_NCBI_gapped_PSI HELP SEE_CLASS:Blaster_local_NCBI
Blaster_local_Wu HELP WU-BLAST can be downloaded from http://blast.wustl.edu/licensing/.
Blaster_SOAP_ebi  
BlastHit  
BlastHitIntersection  
BlastParser You probably do not need to use this class directly.
BlastResult This class provids an object oriented structure of BLAST results.
SortBlastDatabases  
 


'STRAP:multiple sequence alignments '

'The most important classes are StrapAlign, Protein and StrapEvent.'