charite.christo.blast
Class Blaster_SOAP_ebi

java.lang.Object
  charite.christo.blast.AbstractBlaster
      charite.christo.blast.Blaster_SOAP_ebi

All Implemented Interfaces:

SequenceBlaster, Disposable, HasControlPanel, NeedsInternet, java.awt.event.ActionListener, java.util.EventListener

public class Blaster_SOAP_ebi
extends AbstractBlaster
implements NeedsInternet

Field Summary

Fields inherited from class charite.christo.blast.AbstractBlaster

_mapDB, BUT_IN_BROWSER, BUT_TXT, BUT_TXTe, BUT_XML, BUT_XMLb, button

Fields inherited from interface charite.christo.blast.SequenceBlaster

DATABASES_FULL_LIST, DATABASES_NUCLEOTIDES

Fields inherited from interface charite.christo.Disposable

NONE

Constructor Summary

Blaster_SOAP_ebi()

Method Summary

BA	computeIt()
java.lang.String[]	getAvailableDBs(int opt)
java.lang.String[]	getAvailableMatrices() FIXME
static BA	getParamDetail(java.lang.String paramDetail)
java.lang.String	getUrlMask(java.lang.String db)
static java.lang.String[]	parseDatabases(boolean protein, BA xml)

Methods inherited from class charite.christo.blast.AbstractBlaster

actionPerformed, button, cachedResultsNotOlderThanSec, cacheSK, compute, defineParameters, dispose, enableDisable, getAvailableDatabases, getBlastProgram, getControlPanel, getDatabase, getMatrix, getNumberOfAlignments, getPrgParas, getQuery, getQuerySequence, getResultXml, getSensitivity, getSharedInstance, isAAQuery, isDisposed, log, setAAQuerySequence, setDatabase, setMatrix, setNTQuerySequence, setNumberOfAlignments, setSensitivity, setSharedInstance, setUrlResultHtml, skipDatabases

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Blaster_SOAP_ebi

public Blaster_SOAP_ebi()

Method Detail

getAvailableDBs

public java.lang.String[] getAvailableDBs(int opt)

Specified by:

getAvailableDBs in class AbstractBlaster

getAvailableMatrices

public java.lang.String[] getAvailableMatrices()

Description copied from class: AbstractBlaster

FIXME

Specified by:

getAvailableMatrices in interface SequenceBlaster

Overrides:

getAvailableMatrices in class AbstractBlaster

computeIt

public BA computeIt()

Specified by:

computeIt in class AbstractBlaster

getParamDetail

public static BA getParamDetail(java.lang.String paramDetail)

parseDatabases

public static java.lang.String[] parseDatabases(boolean protein,
                                                BA xml)

getUrlMask

public java.lang.String getUrlMask(java.lang.String db)