charite.christo.blast
Class BlastHit

java.lang.Object
  charite.christo.blast.BlastHit

public final class BlastHit
extends java.lang.Object

Constructor Summary

BlastHit()

Method Summary

void	addAlignment(BlastAlignment a)
BlastAlignment[]	getAlignments()
BlastResult	getBlastResult()
java.lang.String	getDatabase()
byte[]	getDescription()
byte[]	getDescription(int[] fromTo)
java.lang.String	getID()
int	getNumber()
void	setBlastResult(BlastResult br)
void	setDatabase(java.lang.String s)
void	setDescription(byte[] s, int from, int to)
void	setId(java.lang.String s)
void	setNumber(int i)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BlastHit

public BlastHit()

Method Detail

setBlastResult

public void setBlastResult(BlastResult br)

getBlastResult

public BlastResult getBlastResult()

setId

public void setId(java.lang.String s)

setDatabase

public void setDatabase(java.lang.String s)

getID

public java.lang.String getID()

getDatabase

public java.lang.String getDatabase()

setNumber

public void setNumber(int i)

getNumber

public int getNumber()

getAlignments

public BlastAlignment[] getAlignments()

addAlignment

public void addAlignment(BlastAlignment a)

setDescription

public void setDescription(byte[] s,
                           int from,
                           int to)

getDescription

public byte[] getDescription(int[] fromTo)

getDescription

public byte[] getDescription()