charite.christo.protein
Class DAS

java.lang.Object
  javax.swing.border.AbstractBorder
      charite.christo.ChRenderer
          charite.christo.protein.DAS

All Implemented Interfaces:

PaintHook, ProcessEv, java.io.Serializable, java.util.Comparator, javax.swing.border.Border, javax.swing.CellEditor, javax.swing.ListCellRenderer, javax.swing.table.TableCellEditor, javax.swing.table.TableCellRenderer, javax.swing.tree.TreeCellRenderer

public class DAS
extends ChRenderer
implements java.util.Comparator

See Also:

Serialized Form

Nested Class Summary

static class	DAS.Capability
static class	DAS.Coordinates
static class	DAS.Entry

Field Summary

static java.util.List<java.lang.String>	_vRegistry
static java.lang.String[]	AUTHORITIES
static java.lang.String	CAPABILITY_TYPE_feature
static int	DAYS_VALID
static java.lang.String[]	DB_SOURCE
static java.lang.String[]	IMPORTANT_FEATURES
static java.lang.String[]	POSSIBLE_CAPABILITY_TYPES
static java.lang.String	RUN_EXAMPLE_LOADED
static java.lang.String	UniProt
static java.lang.String	URL_REGISTRY

Fields inherited from class charite.christo.ChRenderer

_value, BUT_WIDTH, CLASS_NAMES, CMD_FOND_NAME, KEY_CB_SELECTED, KEY_EDITED_COL, KEY_EDITED_ROW, KEY_EDITOR_COMPONENT, KEY_NOT_EDITABLE_BG, KEY_RENDERER_COMPONENT, KEY_TO_CLOSE, KEY_TOGGLE_SELECTED, KOPT_FULL_FILE_PATH, KOPT_NO_CHANGE_FG_AND_BG_IF_SELECTED, LAST_PATH_COMPONENT_DOT, LAST_PATH_COMPONENT_SLASH, SMALL_CLOSE, SMALL_MAXIM, STRIKE_THROUGH_THICK, STRIKE_THROUGH_V

Constructor Summary

DAS()

Method Summary

int	compare(java.lang.Object o1, java.lang.Object o2)
static java.io.File	downloadURL(java.lang.String ref, char chain, DAS.Entry entry, java.lang.String type, ChRunnable log)
static DAS.Entry	getEntryForTitle(java.lang.String t, ChRunnable log)
static java.net.URL	getURL(java.lang.String ref, char chain, DAS.Entry entry, java.lang.String type)
static java.lang.String	pdb2uniprot(boolean immediatly, java.lang.String pdb, char chain, ChRunnable log)
static DAS.Entry[]	readRegistry(ChRunnable log)
static java.lang.Thread	thread_readRegistry(ChRunnable log)

Methods inherited from class charite.christo.ChRenderer

addCellEditorListener, cancelCellEditing, drawSmallButtons, editedCol, editedRow, getBorderInsets, getCellEditorValue, getListCellRendererComponent, getTableCellEditorComponent, getTableCellRendererComponent, getTreeCellRendererComponent, inButClose, isCellEditable, label, options, options, paint, paintBorder, paintHook, process, processEv, randomStrikeThrough, removeCellEditorListener, setEnabled, setOrigRenderer, setRendererText, setRendererTextWeak, setSmallButtonX, setSmallButtonXc, shouldSelectCell, stopCellEditing, textField

Methods inherited from class javax.swing.border.AbstractBorder

getBaseline, getBaselineResizeBehavior, getBorderInsets, getInteriorRectangle, getInteriorRectangle, isBorderOpaque

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Comparator

equals

Field Detail

DAYS_VALID

public static final int DAYS_VALID

See Also:

Constant Field Values

RUN_EXAMPLE_LOADED

public static final java.lang.String RUN_EXAMPLE_LOADED

See Also:

Constant Field Values

URL_REGISTRY

public static final java.lang.String URL_REGISTRY

See Also:

Constant Field Values

CAPABILITY_TYPE_feature

public static final java.lang.String CAPABILITY_TYPE_feature

See Also:

Constant Field Values

UniProt

public static final java.lang.String UniProt

See Also:

Constant Field Values

AUTHORITIES

public static final java.lang.String[] AUTHORITIES

POSSIBLE_CAPABILITY_TYPES

public static final java.lang.String[] POSSIBLE_CAPABILITY_TYPES

_vRegistry

public static final java.util.List<java.lang.String> _vRegistry

IMPORTANT_FEATURES

public static final java.lang.String[] IMPORTANT_FEATURES

DB_SOURCE

public static final java.lang.String[] DB_SOURCE

Constructor Detail

DAS

public DAS()

Method Detail

getURL

public static java.net.URL getURL(java.lang.String ref,
                                  char chain,
                                  DAS.Entry entry,
                                  java.lang.String type)

downloadURL

public static java.io.File downloadURL(java.lang.String ref,
                                       char chain,
                                       DAS.Entry entry,
                                       java.lang.String type,
                                       ChRunnable log)

getEntryForTitle

public static DAS.Entry getEntryForTitle(java.lang.String t,
                                         ChRunnable log)

thread_readRegistry

public static java.lang.Thread thread_readRegistry(ChRunnable log)

readRegistry

public static DAS.Entry[] readRegistry(ChRunnable log)

compare

public int compare(java.lang.Object o1,
                   java.lang.Object o2)

Specified by:

compare in interface java.util.Comparator

pdb2uniprot

public static java.lang.String pdb2uniprot(boolean immediatly,
                                           java.lang.String pdb,
                                           char chain,
                                           ChRunnable log)