charite.christo.protein
Class CrudeSequenceSimilarity

java.lang.Object
  charite.christo.protein.CrudeSequenceSimilarity

public class CrudeSequenceSimilarity
extends java.lang.Object

Counting identical residues in two aligned sequences. see http://wikiomics.org/wiki/Percentage_identity

Method Summary

static Ratio	getIdentity(byte[] seq1, byte[] seq2, int from, int to)
static Ratio	getIdentity(Ratio result, byte[] seq1, byte[] seq2, int from, int to)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

getIdentity

public static Ratio getIdentity(byte[] seq1,
                                byte[] seq2,
                                int from,
                                int to)

getIdentity

public static Ratio getIdentity(Ratio result,
                                byte[] seq1,
                                byte[] seq2,
                                int from,
                                int to)