'STRAP:multiple sequence alignments '

charite.christo
Class ChJTextPane

java.lang.Object
  extended by java.awt.Component
      extended by java.awt.Container
          extended by javax.swing.JComponent
              extended by javax.swing.text.JTextComponent
                  extended by javax.swing.JEditorPane
                      extended by javax.swing.JTextPane
                          extended by charite.christo.ChJTextPane
All Implemented Interfaces:
java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, javax.accessibility.Accessible, javax.swing.Scrollable

public class ChJTextPane
extends javax.swing.JTextPane

HELP

Text-Pane short-cuts

The multi-line text-pane is derived from the standard Java text-pane and provides additional functionality (http://www.bioinformatics.org/strap/straputils/). Shortcuts with the CTRL key: The control key is locateted at the left on the keyboard is labeled "Control", "Ctrl" or "Strg", IKIde:Steuerung_(Taste). The text-pane receives the key-strokes only if it has the input focus. Click to set focus. Function keys: For editable text fields the following features may or may not be active:

Hyperlinks

In most text views URLs like http://www.google.de or database references like PUBMED:12166070 or PUBMED{fructose glucose} or EC classes like "1.2.2.1" can be clicked to open the selected item in the browser or document viewer. To specify another Web-browser hold the CTRL-key while clicking. The list of database links can be customized: CUSTOMIZE:Customize#webLinks!, CUSTOMIZE:Customize#databases!, CUSTOMIZE:Customize#proteinDatabases!.

Context Menus

The context menu is opened by right-clicking a word. Pubmed links like PMID2840859 have a specific context menu.

Auto-word-completion

WIKI:Word_completion available for certain text views. Typing the beginning of word and hitting the Tab-key or alt-/ completes the word. In case of ambiguity, the desired word may come up by pressing the key several times. INCLUDE_DOC:ChCodeViewer

See Also:
Serialized Form

Nested Class Summary
 
Nested classes/interfaces inherited from class javax.swing.text.JTextComponent
javax.swing.text.JTextComponent.AccessibleJTextComponent, javax.swing.text.JTextComponent.DropLocation, javax.swing.text.JTextComponent.KeyBinding
 
Nested classes/interfaces inherited from class javax.swing.JComponent
javax.swing.JComponent.AccessibleJComponent
 
Nested classes/interfaces inherited from class java.awt.Component
java.awt.Component.BaselineResizeBehavior
 
Field Summary
static java.lang.String KEYBINDINGS
           
 
Fields inherited from class javax.swing.JEditorPane
HONOR_DISPLAY_PROPERTIES, W3C_LENGTH_UNITS
 
Fields inherited from class javax.swing.text.JTextComponent
DEFAULT_KEYMAP, FOCUS_ACCELERATOR_KEY
 
Fields inherited from class javax.swing.JComponent
TOOL_TIP_TEXT_KEY, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW
 
Fields inherited from class java.awt.Component
BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT
 
Fields inherited from interface java.awt.image.ImageObserver
ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH
 
Constructor Summary
ChJTextPane(java.lang.CharSequence txt)
           
 
Method Summary
 java.util.List getDndDateien()
           
 int getFixedRowHeight()
           
 java.awt.Dimension getPreferredSize()
           
 boolean getScrollableTracksViewportWidth()
           
 java.lang.String getToolTipText(java.awt.event.MouseEvent mev)
           
 void paintComponent(java.awt.Graphics g)
           
 void processEvent(java.awt.AWTEvent ev)
           
 ChJTextPane t(java.lang.CharSequence txt)
           
 ChTextComponents tools()
           
 
Methods inherited from class javax.swing.JTextPane
addStyle, getCharacterAttributes, getInputAttributes, getLogicalStyle, getParagraphAttributes, getStyle, getStyledDocument, getUIClassID, insertComponent, insertIcon, removeStyle, replaceSelection, setCharacterAttributes, setDocument, setEditorKit, setLogicalStyle, setParagraphAttributes, setStyledDocument
 
Methods inherited from class javax.swing.JEditorPane
addHyperlinkListener, createEditorKitForContentType, fireHyperlinkUpdate, getAccessibleContext, getContentType, getEditorKit, getEditorKitClassNameForContentType, getEditorKitForContentType, getHyperlinkListeners, getPage, getScrollableTracksViewportHeight, getText, read, registerEditorKitForContentType, registerEditorKitForContentType, removeHyperlinkListener, scrollToReference, setContentType, setEditorKitForContentType, setPage, setPage, setText
 
Methods inherited from class javax.swing.text.JTextComponent
addCaretListener, addInputMethodListener, addKeymap, copy, cut, getActions, getCaret, getCaretColor, getCaretListeners, getCaretPosition, getDisabledTextColor, getDocument, getDragEnabled, getDropLocation, getDropMode, getFocusAccelerator, getHighlighter, getInputMethodRequests, getKeymap, getKeymap, getMargin, getNavigationFilter, getPreferredScrollableViewportSize, getPrintable, getScrollableBlockIncrement, getScrollableUnitIncrement, getSelectedText, getSelectedTextColor, getSelectionColor, getSelectionEnd, getSelectionStart, getText, getUI, isEditable, loadKeymap, modelToView, moveCaretPosition, paste, print, print, print, read, removeCaretListener, removeKeymap, removeNotify, select, selectAll, setCaret, setCaretColor, setCaretPosition, setComponentOrientation, setDisabledTextColor, setDragEnabled, setDropMode, setEditable, setFocusAccelerator, setHighlighter, setKeymap, setMargin, setNavigationFilter, setSelectedTextColor, setSelectionColor, setSelectionEnd, setSelectionStart, setUI, updateUI, viewToModel, write
 
Methods inherited from class javax.swing.JComponent
addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintImmediately, paintImmediately, print, printAll, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update
 
Methods inherited from class java.awt.Container
add, add, add, add, add, addContainerListener, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusBackward, transferFocusDownCycle, validate
 
Methods inherited from class java.awt.Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, contains, createImage, createImage, createVolatileImage, createVolatileImage, dispatchEvent, enable, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusUpCycle
 
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Field Detail

KEYBINDINGS

public static final java.lang.String KEYBINDINGS
See Also:
Constant Field Values
Constructor Detail

ChJTextPane

public ChJTextPane(java.lang.CharSequence txt)
Method Detail

tools

public final ChTextComponents tools()

paintComponent

public void paintComponent(java.awt.Graphics g)
Overrides:
paintComponent in class javax.swing.JComponent

processEvent

public void processEvent(java.awt.AWTEvent ev)
Overrides:
processEvent in class java.awt.Container

getToolTipText

public java.lang.String getToolTipText(java.awt.event.MouseEvent mev)
Overrides:
getToolTipText in class javax.swing.text.JTextComponent

t

public ChJTextPane t(java.lang.CharSequence txt)

getScrollableTracksViewportWidth

public boolean getScrollableTracksViewportWidth()
Specified by:
getScrollableTracksViewportWidth in interface javax.swing.Scrollable
Overrides:
getScrollableTracksViewportWidth in class javax.swing.JEditorPane

getFixedRowHeight

public int getFixedRowHeight()

getPreferredSize

public java.awt.Dimension getPreferredSize()
Overrides:
getPreferredSize in class javax.swing.JEditorPane

getDndDateien

public java.util.List getDndDateien()

'STRAP:multiple sequence alignments '

'The most important classes are StrapAlign, Protein and StrapEvent.'