'STRAP:multiple sequence alignments '

charite.christo.interfaces
Interface VisibleIn123

All Superinterfaces:
Colored
All Known Implementing Classes:
AbstractResidueSelection, AbstractVisibleIn123

public interface VisibleIn123
extends Colored

Determins the style how a selection is visualized and where it is visualized. It can be shown in the alignment, the scrollbar and the 3D-visualization.


Field Summary
static int BIT_SHIFT_LINE
           
static int CIRCLE
           
static int DOTTED
           
static int EVERYWHERE
           
static int FULL_BACKGROUND
           
static int HIDDEN
           
static int HTML
           
static int IMAGE
           
static int IMAGE_NO_FILL
           
static int JALVIEW
           
static int LINES
           
static int LOWER_HALF_BACKGROUND
           
static int MAX_VARIABLE
           
static int SB
           
static int SEQUENCE
           
static int STRUCTURE
           
static int UNDERLINE
           
static int UPPER_HALF_BACKGROUND
           
 
Method Summary
 Color getColor()
           
 int getStyle()
           
 int getVisibleWhere()
          e.g.
 void setVisibleWhere(int w)
           
 
Methods inherited from interface charite.christo.interfaces.Colored
setColor
 

Field Detail

FULL_BACKGROUND

static final int FULL_BACKGROUND
See Also:
Constant Field Values

DOTTED

static final int DOTTED
See Also:
Constant Field Values

LOWER_HALF_BACKGROUND

static final int LOWER_HALF_BACKGROUND
See Also:
Constant Field Values

UPPER_HALF_BACKGROUND

static final int UPPER_HALF_BACKGROUND
See Also:
Constant Field Values

CIRCLE

static final int CIRCLE
See Also:
Constant Field Values

IMAGE

static final int IMAGE
See Also:
Constant Field Values

UNDERLINE

static final int UNDERLINE
See Also:
Constant Field Values

LINES

static final int LINES
See Also:
Constant Field Values

IMAGE_NO_FILL

static final int IMAGE_NO_FILL
See Also:
Constant Field Values

MAX_VARIABLE

static final int MAX_VARIABLE
See Also:
Constant Field Values

HIDDEN

static final int HIDDEN
See Also:
Constant Field Values

SEQUENCE

static final int SEQUENCE
See Also:
Constant Field Values

STRUCTURE

static final int STRUCTURE
See Also:
Constant Field Values

SB

static final int SB
See Also:
Constant Field Values

HTML

static final int HTML
See Also:
Constant Field Values

JALVIEW

static final int JALVIEW
See Also:
Constant Field Values

EVERYWHERE

static final int EVERYWHERE
See Also:
Constant Field Values

BIT_SHIFT_LINE

static final int BIT_SHIFT_LINE
See Also:
Constant Field Values
Method Detail

getColor

Color getColor()
Specified by:
getColor in interface Colored

getVisibleWhere

int getVisibleWhere()
e.g. STRUCTURE | SEQUENCE means visible in 3d and 1d


setVisibleWhere

void setVisibleWhere(int w)

getStyle

int getStyle()

'STRAP:multiple sequence alignments '

'The most important classes are StrapAlign, StrapProtein and StrapEvent.'