charite.christo
Class AbstractResidueSelection

java.lang.Object
  charite.christo.interfaces.AbstractVisibleIn123
      charite.christo.AbstractResidueSelection

All Implemented Interfaces:

Colored, HasClientProperty, HasImage, ResidueSelection, VisibleIn123

public class AbstractResidueSelection
extends AbstractVisibleIn123
implements ResidueSelection, HasImage, HasClientProperty

A skelleton of an Selection of Residues ResidueSelection.

Field Summary

Fields inherited from interface charite.christo.interfaces.ResidueSelection

NONE

Fields inherited from interface charite.christo.interfaces.VisibleIn123

BIT_SHIFT_LINE, CIRCLE, DOTTED, EVERYWHERE, FULL_BACKGROUND, HIDDEN, HTML, IMAGE, IMAGE_NO_FILL, JALVIEW, LINES, LOWER_HALF_BACKGROUND, MAX_VARIABLE, SB, SEQUENCE, STRUCTURE, UNDERLINE, UPPER_HALF_BACKGROUND

Constructor Summary

AbstractResidueSelection()

AbstractResidueSelection(ResidueSelection selection)

Method Summary

int	countLines()
Object	getClientProperty(Object o) See equivalent method in JComponent.
Image	getImage(Component imageObserver)
String	getName()
Protein	getProtein() Usually, the protein reference which is stored in an instance variable is returned.
void	getRGB(int[] rgb)
boolean[]	getSelectedAminoacids() Returns true for each selected residue.
int	getSelectedAminoacidsOffset()
void	putClientProperty(Object key, Object value) See equivalent method in JComponent.
void	setImage(Image i)
void	setImage(String i)
void	setName(String s)
boolean	setProtein(Protein newP) Usually, an instance variable is set with the given protein.
void	setSelectedAminoacids(boolean[] bb, int offset) The selected residues might be initialized.
void	setSelectedRange(int from, int to)
String	toString()

Methods inherited from class charite.christo.interfaces.AbstractVisibleIn123

getColor, getStyle, getVisibleWhere, imageBall, newComboStyle, setColor, setStyle, setVisibleWhere

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

AbstractResidueSelection

public AbstractResidueSelection(ResidueSelection selection)

AbstractResidueSelection

public AbstractResidueSelection()

Method Detail

setProtein

public boolean setProtein(Protein newP)

Description copied from interface: ResidueSelection

Usually, an instance variable is set with the given protein.

Specified by:

setProtein in interface ResidueSelection

Parameters:

newP - a reference to the protein object.

getProtein

public Protein getProtein()

Description copied from interface: ResidueSelection

Usually, the protein reference which is stored in an instance variable is returned.

Specified by:

getProtein in interface ResidueSelection

Returns:

a reference to the protein object.

getSelectedAminoacids

public boolean[] getSelectedAminoacids()

Returns true for each selected residue.

Specified by:

getSelectedAminoacids in interface ResidueSelection

Returns:

true for each selected residue.

getSelectedAminoacidsOffset

public int getSelectedAminoacidsOffset()

Specified by:

getSelectedAminoacidsOffset in interface ResidueSelection

setSelectedAminoacids

public void setSelectedAminoacids(boolean[] bb,
                                  int offset)

Description copied from interface: ResidueSelection

The selected residues might be initialized. Usually the method body can be kept empty.

Specified by:

setSelectedAminoacids in interface ResidueSelection

countLines

public int countLines()

getRGB

public void getRGB(int[] rgb)

toString

public String toString()

Overrides:

toString in class Object

setName

public void setName(String s)

getName

public String getName()

setImage

public void setImage(Image i)

Overrides:

setImage in class AbstractVisibleIn123

setImage

public void setImage(String i)

getImage

public Image getImage(Component imageObserver)

Specified by:

getImage in interface HasImage

Overrides:

getImage in class AbstractVisibleIn123

setSelectedRange

public void setSelectedRange(int from,
                             int to)

getClientProperty

public final Object getClientProperty(Object o)

See equivalent method in JComponent.

Specified by:

getClientProperty in interface HasClientProperty

putClientProperty

public final void putClientProperty(Object key,
                                    Object value)

See equivalent method in JComponent.

Specified by:

putClientProperty in interface HasClientProperty