charite.christo.protein
Class ProteinEvent

java.lang.Object
  charite.christo.protein.ProteinEvent

All Implemented Interfaces:

Runnable

public class ProteinEvent
extends Object
implements Runnable

Event type related to Proteins.

Field Summary

static int	AA_SHADING_CHANGED
static int	ALIGNMENT_CHANGED
static int	ALIGNMENT_SCROLLED
static int	ATOM_COORDINATES_CHANGED
static int	BACKBONE_3D_CLOSED
static int	BACKGROUND_CHANGED
static int	BACKUP_WRITTEN
static int	BIOMOLECULES_SPECIFIED
static int	CHARACTER_SEQUENCE_CHANGED
static int	COMPUTATION_STARTED
static int	CURSOR_CHANGED_PROTEIN
static int	CURSOR_MOVED_WITHIN_PROTEIN
static int	CURSOR_MOVED_WITHIN_PROTEIN_DELAYED
static int	FLAG_ALIGNMENT_CHANGED
static int	FLAG_ATOM_COORDINATES_CHANGED
static int	FLAG_RESIDUE_TYPES_CHANGED
static int	FLAG_ROW_HEADER_CHANGED
static int	FONT_CHANGED
static int	HETERO_OR_NUCLEOTIDE_STRUCTURE_ADDED_OR_REMOVED
static int	IMAGE_DOWNLOADED
static int	NEED_SCROLL_DOWN_ALIGNMENT
static int	NUCL_TRANSLATION_CHANGED
static int	OBJECTS_SELECTED
static int	ORDER_OF_PROTEINS_CHANGED
static int	PLUGIN_CHANGED
static int	PRINT_COMPUTATION_STARTED
static int	PROGRESS
static int	PROTEIN_3D_MOVED
static int	PROTEIN_ICON_CHANGED
static int	PROTEIN_PROTEIN_DISTANCE_CHANGED
static int	PROTEIN_RENAMED
static int	PROTEIN_VIEWER_CLOSED
static int	PROTEIN_VIEWER_LAUNCHED
static int	PROTEIN_XREF_CHANGED
static int	PROTEINS_ADDED
static int	PROTEINS_HIDDEN
static int	PROTEINS_KILLED
static int	PROTEINS_SHOWN
static int	RESIDUE_SELECTION_ADDED
static int	RESIDUE_SELECTION_CHANGED
static int	RESIDUE_SELECTION_CHANGED_COLOR
static int	RESIDUE_SELECTION_DELETED
static int	RESIDUE_SELECTION_RENAMED
static int	RESIDUE_TYPES_CHANGED
static int	SCRIPT_LINE
static int	STRAP_LISTENER_ADDED
static int	USER_PROFILE_CHANGED
static int	VALUE_OF_ALIGN_POSITION_CHANGED
static int	VALUE_OF_ALIGN_POSITION_CHANGED_COLOR
static int	VALUE_OF_PROTEIN_CHANGED
static int	VALUE_OF_RESIDUE_CHANGED
static int	VALUE_OF_RESIDUE_CHANGED_COLOR

Constructor Summary

ProteinEvent(Object source, int typeOfEvent)

Method Summary

Object[]	getParameters() get associated objects
ProteinAlignmentWithGUI	getProteinAlignment()
Object	getSource() get the object where the event was formed
int	getType()
void	run()
ProteinEvent	setParameter(Object o)
ProteinEvent	setParameters(Object[] oo) set associated objects
static void	setProteinAlignmentForAll(ProteinAlignmentWithGUI pa)
ProteinEvent	setSource(Object o)
String	toString() A text-representation of the event

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

FLAG_ALIGNMENT_CHANGED

public static final int FLAG_ALIGNMENT_CHANGED

See Also:

Constant Field Values

FLAG_RESIDUE_TYPES_CHANGED

public static final int FLAG_RESIDUE_TYPES_CHANGED

See Also:

Constant Field Values

FLAG_ROW_HEADER_CHANGED

public static final int FLAG_ROW_HEADER_CHANGED

See Also:

Constant Field Values

FLAG_ATOM_COORDINATES_CHANGED

public static final int FLAG_ATOM_COORDINATES_CHANGED

See Also:

Constant Field Values

CURSOR_MOVED_WITHIN_PROTEIN

public static final int CURSOR_MOVED_WITHIN_PROTEIN

See Also:

Constant Field Values

CURSOR_MOVED_WITHIN_PROTEIN_DELAYED

public static final int CURSOR_MOVED_WITHIN_PROTEIN_DELAYED

See Also:

Constant Field Values

CURSOR_CHANGED_PROTEIN

public static final int CURSOR_CHANGED_PROTEIN

See Also:

Constant Field Values

STRAP_LISTENER_ADDED

public static final int STRAP_LISTENER_ADDED

See Also:

Constant Field Values

PROTEIN_RENAMED

public static final int PROTEIN_RENAMED

See Also:

Constant Field Values

PROTEIN_ICON_CHANGED

public static final int PROTEIN_ICON_CHANGED

See Also:

Constant Field Values

OBJECTS_SELECTED

public static final int OBJECTS_SELECTED

See Also:

Constant Field Values

RESIDUE_TYPES_CHANGED

public static final int RESIDUE_TYPES_CHANGED

See Also:

Constant Field Values

CHARACTER_SEQUENCE_CHANGED

public static final int CHARACTER_SEQUENCE_CHANGED

See Also:

Constant Field Values

NUCL_TRANSLATION_CHANGED

public static final int NUCL_TRANSLATION_CHANGED

See Also:

Constant Field Values

ATOM_COORDINATES_CHANGED

public static final int ATOM_COORDINATES_CHANGED

See Also:

Constant Field Values

PROTEIN_3D_MOVED

public static final int PROTEIN_3D_MOVED

See Also:

Constant Field Values

ALIGNMENT_CHANGED

public static final int ALIGNMENT_CHANGED

See Also:

Constant Field Values

ORDER_OF_PROTEINS_CHANGED

public static final int ORDER_OF_PROTEINS_CHANGED

See Also:

Constant Field Values

PROTEINS_HIDDEN

public static final int PROTEINS_HIDDEN

See Also:

Constant Field Values

PROTEINS_SHOWN

public static final int PROTEINS_SHOWN

See Also:

Constant Field Values

PROTEINS_KILLED

public static final int PROTEINS_KILLED

See Also:

Constant Field Values

PROTEINS_ADDED

public static final int PROTEINS_ADDED

See Also:

Constant Field Values

VALUE_OF_RESIDUE_CHANGED

public static final int VALUE_OF_RESIDUE_CHANGED

See Also:

Constant Field Values

VALUE_OF_ALIGN_POSITION_CHANGED

public static final int VALUE_OF_ALIGN_POSITION_CHANGED

See Also:

Constant Field Values

VALUE_OF_RESIDUE_CHANGED_COLOR

public static final int VALUE_OF_RESIDUE_CHANGED_COLOR

See Also:

Constant Field Values

VALUE_OF_ALIGN_POSITION_CHANGED_COLOR

public static final int VALUE_OF_ALIGN_POSITION_CHANGED_COLOR

See Also:

Constant Field Values

VALUE_OF_PROTEIN_CHANGED

public static final int VALUE_OF_PROTEIN_CHANGED

See Also:

Constant Field Values

PROTEIN_PROTEIN_DISTANCE_CHANGED

public static final int PROTEIN_PROTEIN_DISTANCE_CHANGED

See Also:

Constant Field Values

RESIDUE_SELECTION_CHANGED_COLOR

public static final int RESIDUE_SELECTION_CHANGED_COLOR

See Also:

Constant Field Values

RESIDUE_SELECTION_CHANGED

public static final int RESIDUE_SELECTION_CHANGED

See Also:

Constant Field Values

RESIDUE_SELECTION_ADDED

public static final int RESIDUE_SELECTION_ADDED

See Also:

Constant Field Values

RESIDUE_SELECTION_DELETED

public static final int RESIDUE_SELECTION_DELETED

See Also:

Constant Field Values

RESIDUE_SELECTION_RENAMED

public static final int RESIDUE_SELECTION_RENAMED

See Also:

Constant Field Values

HETERO_OR_NUCLEOTIDE_STRUCTURE_ADDED_OR_REMOVED

public static final int HETERO_OR_NUCLEOTIDE_STRUCTURE_ADDED_OR_REMOVED

See Also:

Constant Field Values

PLUGIN_CHANGED

public static final int PLUGIN_CHANGED

See Also:

Constant Field Values

BACKUP_WRITTEN

public static final int BACKUP_WRITTEN

See Also:

Constant Field Values

AA_SHADING_CHANGED

public static final int AA_SHADING_CHANGED

See Also:

Constant Field Values

BACKGROUND_CHANGED

public static final int BACKGROUND_CHANGED

See Also:

Constant Field Values

FONT_CHANGED

public static final int FONT_CHANGED

See Also:

Constant Field Values

ALIGNMENT_SCROLLED

public static final int ALIGNMENT_SCROLLED

See Also:

Constant Field Values

COMPUTATION_STARTED

public static final int COMPUTATION_STARTED

See Also:

Constant Field Values

USER_PROFILE_CHANGED

public static final int USER_PROFILE_CHANGED

See Also:

Constant Field Values

IMAGE_DOWNLOADED

public static final int IMAGE_DOWNLOADED

See Also:

Constant Field Values

PROGRESS

public static final int PROGRESS

See Also:

Constant Field Values

PRINT_COMPUTATION_STARTED

public static final int PRINT_COMPUTATION_STARTED

See Also:

Constant Field Values

BACKBONE_3D_CLOSED

public static final int BACKBONE_3D_CLOSED

See Also:

Constant Field Values

PROTEIN_VIEWER_LAUNCHED

public static final int PROTEIN_VIEWER_LAUNCHED

See Also:

Constant Field Values

PROTEIN_VIEWER_CLOSED

public static final int PROTEIN_VIEWER_CLOSED

See Also:

Constant Field Values

PROTEIN_XREF_CHANGED

public static final int PROTEIN_XREF_CHANGED

See Also:

Constant Field Values

NEED_SCROLL_DOWN_ALIGNMENT

public static final int NEED_SCROLL_DOWN_ALIGNMENT

See Also:

Constant Field Values

BIOMOLECULES_SPECIFIED

public static final int BIOMOLECULES_SPECIFIED

See Also:

Constant Field Values

SCRIPT_LINE

public static final int SCRIPT_LINE

See Also:

Constant Field Values

Constructor Detail

ProteinEvent

public ProteinEvent(Object source,
                    int typeOfEvent)

Method Detail

setProteinAlignmentForAll

public static void setProteinAlignmentForAll(ProteinAlignmentWithGUI pa)

run

public void run()

Specified by:

run in interface Runnable

getType

public final int getType()

setSource

public ProteinEvent setSource(Object o)

getSource

public final Object getSource()

get the object where the event was formed

getParameters

public Object[] getParameters()

get associated objects

setParameters

public final ProteinEvent setParameters(Object[] oo)

set associated objects

setParameter

public final ProteinEvent setParameter(Object o)

toString

public String toString()

A text-representation of the event

Overrides:

toString in class Object

getProteinAlignment

public ProteinAlignmentWithGUI getProteinAlignment()