charite.christo.protein
Class SwissHeaderParser

java.lang.Object
  charite.christo.protein.SwissHeaderParser

public class SwissHeaderParser
extends java.lang.Object

The header of swissprot files contains the definition, organism ... . Asscssion Number: AC P04585; O09777; Q9WJC5; EC-Number DE (EC 2.7.7.7) (EC 3.1.26.4) CDS FT CDS complement(join(1787209..1787388,1787427..1788041, FT CDS 1819165..1821225 CDS join(5721..5921,6225..6368,6657..6813,6945..6972, 7581..7689,7772..7864,7968..8031,8450..8548,8787..8890, ... 26572..26589) /gene="MYH7" /note="cardiac myosin" /codon_start=1 /product="beta-myosin heavy chain" /protein_id="AAA51837.1" /db_xref="GI:179508" /db_xref="GDB:G00-120-215" in ENSMUSG00000014704 it looks CDS join(complement(2261..2639),complement(881..1620))

Format Specification: http://www.expasy.org/sprot/userman.html http://www.uniprot.org/manual

Method Summary

static boolean

parse(Protein p, BA ba)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

parse

public static boolean parse(Protein p,
                            BA ba)