charite.christo.strap.extensions
Class AbstractSubcellularLocation
java.lang.Object
charite.christo.strap.extensions.AbstractSubcellularLocation
- All Implemented Interfaces:
- PredictSubcellularLocation
- Direct Known Subclasses:
- SubcellularLocationHum_mPloc, SubcellularLocationPLOC
public abstract class AbstractSubcellularLocation
- extends java.lang.Object
- implements PredictSubcellularLocation
Fields inherited from interface charite.christo.protein.PredictSubcellularLocation |
CENTRIOLE, CYTOSKELETON, CYTOSOL, ER, ERROR, GOLGI, HUMAN, LYSOSOME, MAX_VARIABLE, MEMBRANE, MICROSOME, MITO_MATRIX, NUCLEUS, PEROXISOME, SECRETED, SYNAPSE, UNKNOWN |
Methods inherited from class java.lang.Object |
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
AbstractSubcellularLocation
public AbstractSubcellularLocation()
setResidueType
public void setResidueType(byte[] aa)
- Specified by:
setResidueType
in interface PredictSubcellularLocation
getResidueType
public byte[] getResidueType()
getCompartments
public PredictSubcellularLocation.Prediction[] getCompartments()
- Specified by:
getCompartments
in interface PredictSubcellularLocation
computeOutput
public abstract BA computeOutput()
setOrganism
public void setOrganism(int organism)
- Specified by:
setOrganism
in interface PredictSubcellularLocation
getPrgParas
public final PrgParas getPrgParas()
setSharedInstance
public final void setSharedInstance(java.lang.Object shared)
getSharedInstance
public final java.lang.Object getSharedInstance()
defineParameters
public void defineParameters(long opt,
java.lang.String s)
'The most important classes are StrapAlign, Protein and StrapEvent.'