'STRAP:multiple sequence alignments '

charite.christo.strap.extensions
Class SubcellularLocationPLOC

java.lang.Object
  extended by charite.christo.strap.extensions.AbstractSubcellularLocation
      extended by charite.christo.strap.extensions.SubcellularLocationPLOC
All Implemented Interfaces:
HasPrgParas, NeedsSharedInstance, PredictSubcellularLocation

public class SubcellularLocationPLOC
extends AbstractSubcellularLocation
implements HasPrgParas

HELP http://www.genome.jp/SIT/plocdir/ Publication PUBMED:12967962
Author: Keun-Joon Park and Minoru Kanehisa (2003)


Nested Class Summary
 
Nested classes/interfaces inherited from interface charite.christo.protein.PredictSubcellularLocation
PredictSubcellularLocation.Prediction
 
Field Summary
 
Fields inherited from interface charite.christo.HasPrgParas
FURTHER_PARAMETERS
 
Fields inherited from interface charite.christo.protein.PredictSubcellularLocation
CENTRIOLE, CYTOSKELETON, CYTOSOL, ER, ERROR, GOLGI, HUMAN, LYSOSOME, MAX_VARIABLE, MEMBRANE, MICROSOME, MITO_MATRIX, NUCLEUS, PEROXISOME, SECRETED, SYNAPSE, UNKNOWN
 
Constructor Summary
SubcellularLocationPLOC()
           
 
Method Summary
 BA computeOutput()
           
 
Methods inherited from class charite.christo.strap.extensions.AbstractSubcellularLocation
defineParameters, getCompartments, getPrgParas, getResidueType, getSharedInstance, setOrganism, setResidueType, setSharedInstance
 
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 
Methods inherited from interface charite.christo.HasPrgParas
defineParameters, getPrgParas
 
Methods inherited from interface charite.christo.NeedsSharedInstance
getSharedInstance, setSharedInstance
 

Constructor Detail

SubcellularLocationPLOC

public SubcellularLocationPLOC()
Method Detail

computeOutput

public BA computeOutput()
Specified by:
computeOutput in class AbstractSubcellularLocation

'STRAP:multiple sequence alignments '

'The most important classes are StrapAlign, Protein and StrapEvent.'