charite.christo.strap.extensions
Class Blaster_local_NCBI_gapped_PSI

java.lang.Object
  charite.christo.strap.extensions.AbstractBlaster
      charite.christo.strap.extensions.Blaster_local_Wu
          charite.christo.strap.extensions.Blaster_local_NCBI
              charite.christo.strap.extensions.Blaster_local_NCBI_gapped_PSI

All Implemented Interfaces:

CacheResult.Cacheable, ChRunnable, Disposable, HasControlPanel, HasSharedControlPanel, NeedsInternet, SequenceBlaster, ActionListener, EventListener

public class Blaster_local_NCBI_gapped_PSI
extends Blaster_local_NCBI
implements HasSharedControlPanel

HELP SEE_CLASS:Blaster_local_NCBI

Nested Class Summary

Nested classes/interfaces inherited from class charite.christo.strap.extensions.AbstractBlaster

AbstractBlaster.Result

Field Summary

Fields inherited from class charite.christo.strap.extensions.AbstractBlaster

isAAQuery, matrix, urlResultHtml

Fields inherited from interface charite.christo.interfaces.ChRunnable

APPEND, DOWNLOAD_FINISHED, INTERPRET_LINE, LOG, SET_ICON_IMAGE

Constructor Summary

Blaster_local_NCBI_gapped_PSI()

Method Summary

String	getCacheKey() Several values are stored in one and the same file on HD to avoid making too many files.
String	getCommandLine()
Container	getSharedControlPanel()
void	setNumPasses(int passes)

Methods inherited from class charite.christo.strap.extensions.Blaster_local_NCBI

getAvailableMatrices

Methods inherited from class charite.christo.strap.extensions.Blaster_local_Wu

computeIt, getAvailableDatabases, getControlPanel, setAdditionalOptions, setProgramName, setShellVariableBLASTDB

Methods inherited from class charite.christo.strap.extensions.AbstractBlaster

actionPerformed, butViewTxt, butViewXml, compute, dispose, getBlastProgram, getCacheClass, getCacheSection, getDatabase, getMatrix, getNumberOfAlignments, getQuery, getQuerySequence, getResultXml, isAAQuery, isDisposed, log, run, setAAQuerySequence, setDatabase, setMatrix, setNTQuerySequence, setNumberOfAlignments, urlResultHtml

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Blaster_local_NCBI_gapped_PSI

public Blaster_local_NCBI_gapped_PSI()

Method Detail

setNumPasses

public void setNumPasses(int passes)

getSharedControlPanel

public Container getSharedControlPanel()

Specified by:

getSharedControlPanel in interface HasSharedControlPanel

getCommandLine

public String getCommandLine()

Overrides:

getCommandLine in class Blaster_local_Wu

getCacheKey

public String getCacheKey()

Description copied from interface: CacheResult.Cacheable

Several values are stored in one and the same file on HD to avoid making too many files. The file name is made from this String.

Specified by:

getCacheKey in interface CacheResult.Cacheable

Overrides:

getCacheKey in class AbstractBlaster