charite.christo
Class PDB_separateChains

java.lang.Object
  charite.christo.AbstractInteractiveFileProcessor
      charite.christo.PDB_separateChains

All Implemented Interfaces:

java.awt.event.ActionListener, java.util.EventListener

public class PDB_separateChains
extends AbstractInteractiveFileProcessor

HELP Proteins read from a PDB-file are selected. When a protein has more than one chain a new protein file is written for each chain. An underscore and the chain identifier letter is appended to the file name.

Constructor Summary

PDB_separateChains()

Method Summary

static boolean[]	chainsInPDBfile(BA byteArray)
java.lang.String	fileEntry(BA byteArray, java.io.File f)
java.io.File[]	processFile(BA byteArray, java.io.File f, boolean overwrite)
static boolean	writePdbOnlyChain(java.io.File f, char chain, BA ba)

Methods inherited from class charite.christo.AbstractInteractiveFileProcessor

actionPerformed, getCreatedFiles, interactiveProcess, setErrorNonSelected, setTextNorth

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PDB_separateChains

public PDB_separateChains()

Method Detail

fileEntry

public java.lang.String fileEntry(BA byteArray,
                                  java.io.File f)

Specified by:

fileEntry in class AbstractInteractiveFileProcessor

processFile

public java.io.File[] processFile(BA byteArray,
                                  java.io.File f,
                                  boolean overwrite)

Specified by:

processFile in class AbstractInteractiveFileProcessor

chainsInPDBfile

public static boolean[] chainsInPDBfile(BA byteArray)

writePdbOnlyChain

public static boolean writePdbOnlyChain(java.io.File f,
                                        char chain,
                                        BA ba)