charite.christo.strap.extensions
Class ResidueHydrophobicity_TOPPRED

java.lang.Object
  charite.christo.protein.AbstractValueOfResidue
      charite.christo.strap.extensions.ResidueHydrophobicity_TOPPRED

All Implemented Interfaces:

Colored, HasModiCount, HasNativeExec, HasProtein, ValueOfResidue

public class ResidueHydrophobicity_TOPPRED
extends AbstractValueOfResidue
implements HasNativeExec

HELP Web site: HOME_PAGE:Toppred
Publication: PUBMED:7704669
Authors: von Heijne, Claros, Deveaud and Schuerer
SEE_CLASS:TransmembraneHelix_TOPPRED

Constructor Summary

ResidueHydrophobicity_TOPPRED()

Method Summary

BasicExecutable	getNativeExec(boolean createNew)
double[]	getValues() Plugin that returns a numeric value for each amino acid of the protein or null.

Methods inherited from class charite.christo.protein.AbstractValueOfResidue

getColor, getProtein, getSharedInstance, modificationCount, setColor, setProtein, setSharedInstance

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ResidueHydrophobicity_TOPPRED

public ResidueHydrophobicity_TOPPRED()

Method Detail

getValues

public double[] getValues()

Description copied from interface: ValueOfResidue

Plugin that returns a numeric value for each amino acid of the protein or null. These are plotted in the alignment pane. It should notify changes by dispatching a JAVADOC:StrapEvent of type JAVADOC:StrapEvent#VALUE_OF_RESIDUE_CHANGED

Specified by:

getValues in interface ValueOfResidue

getNativeExec

public BasicExecutable getNativeExec(boolean createNew)

Specified by:

getNativeExec in interface HasNativeExec