charite.christo.strap.interfaces
Interface SequenceAlignerTakesProfile

All Superinterfaces:

SequenceAligner

All Known Implementing Classes:

MultipleAlignerClustalW

public interface SequenceAlignerTakesProfile
extends SequenceAligner

Field Summary

Fields inherited from interface charite.christo.interfaces.SequenceAligner

OPTION_USE_SECONDARY_STRUCTURE

Method Summary

void	addProfile(byte[][] ss)
int	getMaxNumberOfProfiles()

Methods inherited from interface charite.christo.interfaces.SequenceAligner

compute, getAlignedSequences, getMaxNumberOfSequences, getSequences, isLocal, setOptions, setSequences

Method Detail

addProfile

void addProfile(byte[][] ss)

getMaxNumberOfProfiles

int getMaxNumberOfProfiles()