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'STRAP:multiple sequence alignments ' | ||||||||
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| Interface Summary | |
|---|---|
| AlignmentWriter | |
| NeedsProteins | Implemented by dialogs that act on a Protein. |
| ProteinProteinDistance | |
| ProteinProteinSimilarity | Returns high values for pairs of similar proteins and small values for dissimilar proteins. |
| ProteinProteinValue | Returns values for pairs of proteins. |
| ProteinsSorter | It can reorder proteins so that similar sequences are in adjacent lines. |
| SelectorOfNucleotides | Selects nucleotides. |
| SequenceAligner3D | |
| SequenceAlignerTakesProfile | |
| StackedAlignment | The Model of an alignment window One row can have several Proteins. |
| StrapExtension | StrapExtension defines a general multi-purpose plugin. |
| StrapListener | All plugins that need to react on changes of the alignment should implement this interface. |
| ValueOfAlignPosition | Plugins that return a numeric value for each position (column) in the alignment or null. |
| ValueOfProtein | Plugin that returns a numeric value for the protein or NaN. |
| ValueOfResidue | |
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