charite.christo.strap.interfaces
Interface ValueOfProtein

All Superinterfaces:

HasProtein

All Known Subinterfaces:

ProteinProteinDistance, ProteinProteinSimilarity, ProteinProteinValue

All Known Implementing Classes:

AbstractAlignAndCompare, AlignmentScore, CountResidues, IndividualSequenceDisSimilarity, RmsdValue, SequenceDisSimilarityAsAligned

public interface ValueOfProtein
extends HasProtein

Plugin that returns a numeric value for the protein or NaN. It is used for bar charts. It should notify changes by dispatching events of type JAVADOC:ProteinEvent#VALUE_OF_PROTEIN_CHANGED and dispatching it with JAVADOC:StrapEvent#run().

Method Summary

void	compute() When it is time consuming then do the calculation in the compute method.
int	getModificationCount()
double	getValue()
boolean	setProtein(Protein p)

Methods inherited from interface charite.christo.interfaces.HasProtein

getProtein

Method Detail

getValue

double getValue()

compute

void compute()

When it is time consuming then do the calculation in the compute method. Non time intensive calculations can be performed in getValue() directly.

setProtein

boolean setProtein(Protein p)

getModificationCount

int getModificationCount()