charite.christo.strap.extensions
Class PhylogeneticTreeATVPROXY

java.lang.Object
  charite.christo.AbstractProxy
      charite.christo.strap.extensions.PhylogeneticTreeATVPROXY

All Implemented Interfaces:

HasSharedControlPanel, PhylogeneticTree

public class PhylogeneticTreeATVPROXY
extends AbstractProxy
implements PhylogeneticTree, HasSharedControlPanel

HELP Forester/ATV takes a multiple sequence alignment and displays a phylogenetic tree.
Author: by Christian Zmasek.
Home: http://sourceforge.net/projects/forester-atv/ and http://www.phylogenomics.us/atv/
Publication: PUBMED:11301314
License: LGPL

Field Summary

static String

FRAME_TITLE

Fields inherited from class charite.christo.AbstractProxy

ACTIVATION, BIOJAVA, COMMONS_COLLECTIONS, EDTFTPJ, JCOMMON, JFREECHART, LOG4J, TAR

Constructor Summary

PhylogeneticTreeATVPROXY()

Method Summary

void	drawTree() Drawws tree.
String	getRequiredJars()
Container	getSharedControlPanel()
static String	getTreeType()
void	setNamesIconsAndGappedSequences(String[] nn, ImageIcon[] icons, byte[][] aa)
static boolean	showExtensions()

Methods inherited from class charite.christo.AbstractProxy

dispose, getControlPanel, getPanel, getScore, interpret, jarFile, jarsContainingNativeLibraries, proxyObject, setSystemClassLoader

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

FRAME_TITLE

public static final String FRAME_TITLE

See Also:

Constant Field Values

Constructor Detail

PhylogeneticTreeATVPROXY

public PhylogeneticTreeATVPROXY()

Method Detail

getRequiredJars

public String getRequiredJars()

Specified by:

getRequiredJars in class AbstractProxy

setNamesIconsAndGappedSequences

public void setNamesIconsAndGappedSequences(String[] nn,
                                            ImageIcon[] icons,
                                            byte[][] aa)

Specified by:

setNamesIconsAndGappedSequences in interface PhylogeneticTree

drawTree

public void drawTree()

Description copied from interface: PhylogeneticTree

Drawws tree. Returns null or HTML-Result.

Specified by:

drawTree in interface PhylogeneticTree

showExtensions

public static boolean showExtensions()

getTreeType

public static String getTreeType()

getSharedControlPanel

public Container getSharedControlPanel()

Specified by:

getSharedControlPanel in interface HasSharedControlPanel

Overrides:

getSharedControlPanel in class AbstractProxy